Gene detail information of Glyur000296s00018740 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G11970.1 | 8.00E-06 | Protein of unknown function (DUF3511) |
| NR | XP_003544544.1 | 3.29E-27 | PREDICTED: uncharacterized protein LOC100780149 [Glycine max] |
| trEMBL | tr|I1M944|I1M944_SOYBN | 1.00E-27 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G11100.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00296 | 3536 | 4597 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000296s00018740.1 | PF12023.3 | DUF3511 | 83 | 111 | 9.90E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.661 |
| SRR1783600 | control | 5.850 |
| SRR1783602 | moderate drought stress | 1.191 |
| SRR1811619 | moderate drought stress | 1.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.261 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.453 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.318 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.310 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.745 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.338 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.137 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 31.406 |
| SRR2868004 | Drought Stress (root) | 39.196 |
| SRR2967015 | Control (root) | 26.570 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.773 |
| SRR9715740 | Leaf | 2.015 |
| SRR9715741 | Leaf | 3.604 |
| SRR9715739 | Root | 14.924 |
| SRR9715742 | Root | 15.273 |
| SRR9715743 | Root | 18.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.457 |
| SRR8749028 | MeJA induced 9h | 7.923 |
| SRR8749029 | MeJA induced 9h | 2.798 |
| SRR8749030 | Uninduced | 8.067 |
| SRR8749031 | Uninduced | 7.591 |
| SRR8749032 | Uninduced | 3.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.356 |
| SRR8400027 | Control - Root | 15.176 |