Gene detail

Gene detail information of Glyur000295s00015305

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G19640.1	4.00E-138	magnesium transporter 4
NR	XP_004511321.1	0	PREDICTED: magnesium transporter MRS2-3-like [Cicer arietinum]
Swissprot	tr\|Q9LJN2\|MRS23_ARATH	4.00E-180	Magnesium transporter MRS2-3
trEMBL	tr\|G7K0Y3\|G7K0Y3_MEDTR	0	Magnesium transporter 2 {ECO:0000313\|EMBL:AES93591.1}

Sequence

Transcript Sequence

>Glyur000295s00015305.1
ATGAGAGGAAACGGAAACGGAAACGGAAACGGAAACGGGAACGAGGAGCGATGGACGACGGCAGGAGGGGGGATTCGGAAGAAAGGGACCGGAGTGAGGGCATGGCTGGTTCTCGACGGCACCGGTGAGACGCAGGTGGTGGAGGCCGGCAAGCACGCCATCATGCGGCGGACTGGCCTCCCCGCCCGCGACCTTCGCATCCTCGACCCTCTCCTCTCCTACCCCTCCACCGTGCTTGGGCGTGAGAGGGCCATCGTCATCAACCTGGAGCACATCAAGGCCATCATCACCGCCCACGAGGTCCTCCTCCTCAACTCCAGAGACCCCTCCGTCACCCCCTTCGTCGACGAGCTCCGCGCCAGGATCCTCCGCCACCACAACGCCNCCACCACCCCCACTCCTGAGAACCAGGACGACGGCCACGGCATCAAGATCCTCCCCTTCGAGTTCGTCGCCCTTGAGGCCTGCCTCGAGGCCGCTTGCAGTGTCCTCGAAAACGAGGCCAAGACGCTGGAGCAGGAGGCCCACCCCGCCCTCGACAAACTCACCTCCAAGATCAGTACCCTCAATTTGGAACGCGTCCGCCAAATCAAGAGCCGTTTGGTTGCCATAACCGGTCGCGTTCAGAAGGTGAGGGACGAATTGGAACACTTGCTCGANGACGATGAAGATATGGCCGAGATGTACCTCACCGACAAGATACTTCAGCAGCAGGAAGCTGCTGAAATATCACTGGATGGTGCGGGCTATGAGGAGCAGCAGCAGAATGCTGACAACTCCGGAGACCAAATGTTTGCGGTCCCCAATCTGCTCAGCCGGGACAGCCGTGGAACCCGTGCCAGCACCACCTACAGTGCTGCCACCAAGCAACTCGATGTGGAGGAGCTCGAGATGCTCCTGGAAGCATACTTCGTACAGATTGACGGCACTCTGAACAAGCTCTCCACGCTGAGGGAGTATGTTGACGACACAGAGGATTATATCAACATCATGCTGGACGACAAGCAGAACCATCTCCTCCAAATGGGAGTCATGTTGACCACAGCAACTCTGGTAGTGAGTGCCTTTGTTGTNGTGGCTGGTATTTTTGGCATGAATATTCATATTGAGCTGTTTGATCCAGCTATATCTGGGATGAGAGAGTTCCTCTGGACTGTTGGTGGCAGCACTGCTGGGACCATATTCTTGTATGTGGTTGCCATTGCCTGGTGCAAGCACAAACGCTTGCTGGAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00295	158748	161392	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0015693 magnesium ion transport

GO:0030001 metal ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015095 magnesium ion transmembrane transporter activity

GO:0046873 metal ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000295s00015305.1	PF01544.13	CorA	295	386	3.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	54.564
SRR1783600	control	54.541
SRR1783602	moderate drought stress	100.716
SRR1811619	moderate drought stress	103.200

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	70.696
DRR006520	Root Summer glycyrrhizin high producing strain	68.193
DRR006521	Root Winter glycyrrhizin high producing strain	60.189
DRR006522	Root Winter glycyrrhizin high producing strain	58.650
DRR006523	Root Summer glycyrrhizin low producing strain	109.709
DRR006524	Root Summer glycyrrhizin low producing strain	109.638
DRR006525	Leaf Summer glycyrrhizin high producing strain	45.002
DRR006526	Leaf Summer glycyrrhizin high producing strain	44.624

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	70.013
SRR2868004	Drought Stress (root)	83.216
SRR2967015	Control (root)	95.802

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.076
SRR9715740	Leaf	48.374
SRR9715741	Leaf	40.301
SRR9715739	Root	134.898
SRR9715742	Root	59.065
SRR9715743	Root	81.826

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.147
SRR8749028	MeJA induced 9h	34.278
SRR8749029	MeJA induced 9h	17.281
SRR8749030	Uninduced	13.925
SRR8749031	Uninduced	7.767
SRR8749032	Uninduced	16.977

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	117.041
SRR8400027	Control - Root	118.794