Gene detail

Gene detail information of Glyur000295s00015292.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G01350.1	7.00E-113	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein
NR	XP_007134882.1	0	hypothetical protein PHAVU_010G084000g [Phaseolus vulgaris]
Swissprot	tr\|Q8GX84\|C3H1_ARATH	1.00E-164	Zinc finger CCCH domain-containing protein 1
trEMBL	tr\|V7ARN7\|V7ARN7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW06876.1}

Sequence

Transcript Sequence

>Glyur000295s00015292.2
CTCAGTTATTGGAATTTGGAAGGTGTTATTATTATTTGAAGATATAGTGTTTGATGAAATGCCCATGTGTATGTTTGCTATATATAAATCAAATTCTAAGCATGGAAGATTCTGATCAACTCGCCAAATCTGCTGAAAACCAGCAAACTGAACAAGTGTGTAGTTTCTTCAGAAAACCAGTTAATAAGAAGAATATAAGGAAACGCACCATTGATAATGAAGATGAGGAGGAGGACTCAAACAATGAAAGCTCTTCGATTCATATTCAGAAAAAGACCCTGAAGCCTGACAATAAGTTGTTCTTTTCCACTGGCTCTTCAAAAAGCTCTGCATCTGCTGAACCTAGTGAAGAACCCGGGAAACCAGTCTTTCATTTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGACAACAAAGCAACNGCAACTTTAGAGACTGAGACTGAGTTTTCGAAAGATGCTCGTGCCATCCGGGAAAGAGCTCTTAAGCAGGCAGCGCAGAGTCTCAAGGGGAAAGACACAAGTTCAGAGGATGGAAAATTATACAAGGGAATGAACAGTTACAAAGACCATAAGGCTGGCTTTCGTAGAGAGCAAACAATTGCTAGTGAAAAAGCTGGTGGTGCACATGGTCCTCTTAGGGCTTCAGCTCACATAAGAGTTTCAGCAAGATTTGATTATCAGCCTGACATATGTAAAGATTATAAGGAAACTGGTTACTGTGGGTATGGTGATTCGTGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAGAAGGAATGGGAAGAAGCTGAGAAAGCAAGGAGGATGAGACTGGCTGCCGGTGAGGATGCAGAAGAGGAGGGTGCTAATTTGACTGATGAAGATGATGATGATTCATTACCATTTGCGTGTTTCATTTGCAGAAAGCCATTTGTGGATCCTGTTGTAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCTTTAAAGCATCATGCAAAGAATAAGAAGTGTTACGTCTGCAATCAGCCAACGCTCGGCATTTTTAATGTTGCTCATGAGATACGAAGGAAGATGGCTGAGGATAAATAATCTCACTCAATACGATCCATGCATATCTTTGCTTGGTTGAAGTTATCTCCCCTCCCCCACACCAACAAAACCCCACCCCACACCATTTTAATTCTGTGTTAAACATTGATGCTCTATAATGAGTTGAAAACATGCATAGGTTTGCGCAGTGGGCTTAGTCTCATCATTTTGTTGTATTTATTTGACTAATAGACCCCAGAATATCAATTAGTGAGAGATATCTGTGTGTATAAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00295	53621	56119	+

Gene family

Gene family	subfamily
Transcription Factors Family	C3H
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000295s00015292.2	PF00642.19	zf-CCCH	209	234	8.20E-10
Glyur000295s00015292.2	PF13920.1	zf-C3HC4_3	283	326	1.90E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.341
SRR1783600	control	24.561
SRR1783602	moderate drought stress	30.145
SRR1811619	moderate drought stress	30.964

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.948
DRR006520	Root Summer glycyrrhizin high producing strain	38.375
DRR006521	Root Winter glycyrrhizin high producing strain	37.562
DRR006522	Root Winter glycyrrhizin high producing strain	36.410
DRR006523	Root Summer glycyrrhizin low producing strain	37.112
DRR006524	Root Summer glycyrrhizin low producing strain	36.807
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.257
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.407

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.361
SRR2868004	Drought Stress (root)	44.544
SRR2967015	Control (root)	46.591

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.211
SRR9715740	Leaf	25.362
SRR9715741	Leaf	26.903
SRR9715739	Root	6.787
SRR9715742	Root	23.108
SRR9715743	Root	20.873

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	71.233
SRR8749028	MeJA induced 9h	66.465
SRR8749029	MeJA induced 9h	48.361
SRR8749030	Uninduced	28.096
SRR8749031	Uninduced	27.550
SRR8749032	Uninduced	19.090

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.482
SRR8400027	Control - Root	43.321