Gene detail information of Glyur000294s00011884 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G33740.2 | 9.00E-56 | Nitrogen regulatory PII-like, alpha/beta |
| NR | AFK35990.1 | 2.54E-105 | unknown [Medicago truncatula] |
| COG | YP_004367874.1 | 4.00E-31 | CutA1 divalent ion tolerance protein [Marinithermus hydrothermalis DSM 14884] |
| Swissprot | tr|P93009|CUTA_ARATH | 4.00E-70 | Protein CutA, chloroplastic (Precursor) |
| trEMBL | tr|G7J568|G7J568_MEDTR | 9.00E-106 | Uncharacterized protein {ECO:0000313|EMBL:AFK35990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00294 | 196785 | 199218 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000294s00011884.1 | PF03091.10 | CutA1 | 93 | 192 | 6.40E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 104.745 |
| SRR1783600 | control | 105.175 |
| SRR1783602 | moderate drought stress | 125.405 |
| SRR1811619 | moderate drought stress | 124.701 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 142.633 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 140.747 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 48.965 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 47.834 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 144.174 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 142.469 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 50.803 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 50.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 46.254 |
| SRR2868004 | Drought Stress (root) | 41.084 |
| SRR2967015 | Control (root) | 37.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 37.854 |
| SRR9715740 | Leaf | 63.356 |
| SRR9715741 | Leaf | 39.420 |
| SRR9715739 | Root | 66.334 |
| SRR9715742 | Root | 48.368 |
| SRR9715743 | Root | 48.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.676 |
| SRR8749028 | MeJA induced 9h | 26.810 |
| SRR8749029 | MeJA induced 9h | 22.227 |
| SRR8749030 | Uninduced | 12.637 |
| SRR8749031 | Uninduced | 3.769 |
| SRR8749032 | Uninduced | 12.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 75.740 |
| SRR8400027 | Control - Root | 74.858 |