Gene detail

Gene detail information of Glyur000294s00011882

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18475.1	4.00E-160	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004501623.1	0	PREDICTED: pentatricopeptide repeat-containing protein At5g18475-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q3E9F0\|PP392_ARATH	0	Pentatricopeptide repeat-containing protein At5g18475
trEMBL	tr\|G7J565\|G7J565_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:AES73190.2}

Sequence

Transcript Sequence

>Glyur000294s00011882.1
ATGGTATCCTCGGCAGCAGTAGAAGACCTTGGACTCACCGGAAGAGGCAGAGGGAATGAGGTTGGAGTCCAAGAGGTTGAGTATGCTGGCGCAGACGTTGGACAGCTCCGTCTCCACCTTGGATCTTCCTTCACGAGCGACACGTGTTCGTCGTTCTTCCTTCCTTCCTCCTTCTGCTCTATCGACGACACGATCCTCCACGCCGCACGCAGCGACCCGATCACGTTCTTGTACGCCACCGATAGGAGGTTCCTCTCCTCCACGCTCAGCTCCGACGCCGGGATCTATCTGTATATAATCATATCAAAATTCATGAAAATTTCTGCAATTAGCAGGCACAAGCCACATAACTGTTTCACTTCAACTGCATCATCATCGTTCTCCTCATCTTCGCTGCCATGGATATCTCCCCTTAATTTTATAAAACCTNCGGAGCCTAAACTGGACCCTCCCCCTGAAATCAGTGTCACTCCCACTGAAGCTCGGAGAAAGAACAAATACATCTCTCATGAGGCTGCTATCAACTTGATCAAACGAGAGAGAGACCCGCAACATGCCTTGAAAATATTTAACATGGTATCAGAACAAAAGGGTTTCAATCACAACAATGCTACATATGGAACGATTCTTCAAAGGCTTGCTCATTTCAAGAAGTTTCAGGCCATTGATAGGGTCCTGCATCAGATGACCTACGAGACTTGCAAATTTCATGAGGGTACATTCATCAACCTCATGAAGCATTACTCAAAATCCTCTCTCCATGAAAAAGTGCTTCGGATGTTTTTCGCTATCCAGCCAATCGTTCGTGAGAAGCCCTCTCCCAAAGCCATCAGCACTTGTCTCAATCTCCTGGTTGAGTCAAACCGGGTTGATTTGGCGCGACAGCTTCTCTTGCATGCCAAGAGGACTCTAACTTATAGGCCAAATGTCTGCATATTTAACATCTTGGTGAAGTACCATTGCAGACATGGGGATCTTGATTCTGCTTTTGAAGTTGTGAAAGAAATGAGGAACTCCAAGTCCTCCTATCCTAATATTGTTACATANTCAACCCTCATGGATGGCCTCTGTCAAAAGGGAAGAGTCAAAGAAGCTTTTGAGCTTTTTGAAGAAATGGTCTCAAGGGACCGGATCGTGCCTGATCCTCTTACTTACAATGTTTTGATCAATGGGTTTTGCCGTGGAGGTAAACCTGATCGCGCTAGAAATGTGATTGAGTTTATGAAAAGTAATGGGTGCCGTCCNAATGTATTCAATTACTCAGCCCTGGTGAATGGTTTATGTAAAGTGGGGAAACTGCAAGATGCAAAAGAGGTTTTTGCTGAGATGAAGAGCTCGGGTTTGAAACCTGATACAGTTAGCTACACTTGTTTGATCAATTTCTTCTGTAGGAATGGGCAAATTGATGAGGCTATAGAGTTGCTTAATGAAATGAAGGAAAATGAATGCCGGGCTGATACTGTTACATTCAATGTCATACTTGGAGGCCTGTGCAGAGAAGGTAGGTTTGAGCAGGCTCTGGATATGGTTGAGAAACTCCCACAGCAGGGTGTCTATTTGAACAAAGGTAGTTACAGGATTGTGCTAAACTCCTTAACTCAAAAATGTGAGTTGGAAAGGGCAAAGAAATTACTAGGGCTAATGCTAAGTAGGGGGTTTCTACCCCATTATGCTACCTCAAATGAATTATTGGTTCGTCTTTGTGAGGCAGGAATGGCTGATGCTGCTGCTGCGGCACTATTTGACTTGGTGGATATGGGGTTCCAGCCNCGGCTTGATTCTTGGGAACTTTTAATCGATTTAATCTGCAGAGACAGAAAGTTATTGTATGTTTTTGAGCTACTTGATGAATTAAATCCCCCATTTGAGGCAAAGGATGATATAGAAGTGTATTCAGATAAAACAGCAATGCTGTTGATGAATCCACAATGTGGCAGGCATTCTCTATCAACAATTCCAAGAGGAAATTTCATGTATCATCCGGAAGCCTCTGGACACCCAGGTGGAATTTGGTGCTTATGGGACTCTATTTTTGCAGTAGCTGGTTATTTAAGCCAGAAGAAGCATGATCTGAAAAAGAAGGGAAATTCATTGTGGAGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00294	185183	188307	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000294s00011882.1	PF12854.2	PPR_1	307	337	7.20E-10
Glyur000294s00011882.1	PF13041.1	PPR_2	344	394	2.30E-18
Glyur000294s00011882.1	PF12854.2	PPR_1	411	444	9.70E-12
Glyur000294s00011882.1	PF13041.1	PPR_2	450	499	1.20E-17
Glyur000294s00011882.1	PF01535.15	PPR	524	553	0.26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.472
SRR1783600	control	7.123
SRR1783602	moderate drought stress	8.100
SRR1811619	moderate drought stress	7.503

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.431
DRR006520	Root Summer glycyrrhizin high producing strain	12.389
DRR006521	Root Winter glycyrrhizin high producing strain	8.563
DRR006522	Root Winter glycyrrhizin high producing strain	7.597
DRR006523	Root Summer glycyrrhizin low producing strain	11.408
DRR006524	Root Summer glycyrrhizin low producing strain	10.911
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.431
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.201

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.972
SRR2868004	Drought Stress (root)	5.654
SRR2967015	Control (root)	4.321

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.443
SRR9715740	Leaf	1.820
SRR9715741	Leaf	1.767
SRR9715739	Root	1.902
SRR9715742	Root	2.211
SRR9715743	Root	2.800

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.550
SRR8749028	MeJA induced 9h	2.190
SRR8749029	MeJA induced 9h	1.809
SRR8749030	Uninduced	1.331
SRR8749031	Uninduced	0.425
SRR8749032	Uninduced	0.596

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.522
SRR8400027	Control - Root	4.260