Gene detail

Gene detail information of Glyur000294s00011875

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G09750.1	6.00E-126	Eukaryotic aspartyl protease family protein
NR	BAE71208.1	0	hypothetical protein [Trifolium pratense]
Swissprot	tr\|Q766C3\|NEP1_NEPGR	3.00E-47	Aspartic proteinase nepenthesin-1 (Precursor)
trEMBL	tr\|Q2PEZ2\|Q2PEZ2_TRIPR	0	Putative uncharacterized protein {ECO:0000313\|EMBL:BAE71210.1}

Sequence

Transcript Sequence

>Glyur000294s00011875.1
ATGCTGAATGTTAAGTTGGCCACAGCCTTAATACTTTGCTCCGTAATTTACAGCAATGCCGTTGACCCGTGTGCCCCTCAACGGGATGACTCAGATCTCAGCGTGATTCCCATGTACGGCAAATGCTCACCGTTCAACCCACCCAAAACAGACTCATGGGCCAACCGCGTGATGAACATGGCCTCCAAAGACGACCCAGAGCGTATGAAGTACCTCTCCACCTTAGTGGGCCAAAAGACAGTTTCTTCGGCCCCAATCGCATCGGGCCAGGCCTTCAACATCGGCAACTACGTGGTTCGGGTCAAAATCGGGACACCCGGTCAACTCCTCTTCATGGTCCTCGACACCAGCACCGACGAGGCCTTTGTCCCTTGCTCCGGCTGCACCGGCTGCCCCGCCACCACCGCCACCTTCTCCCCAAACGCCTCCACCAGTTACGGCCCACTGGACTGCTCCGTTCCGCAATGCGGTCAGGTCCGTGGGCTCTCTTGCCCAGCCACAGGATCCGGCGCGTGTTCCTTCAACCAGTCCTACGCGGGTTCCTCTTTCTCCGCCACCCTCGTCCAAGACTCCCTCCGATTAGCCGCTGACGTCATCCCTACCTACTCTTTCGGTTGCATCAACGCCGTTACAGGTGCTTCCATTCCGGCCCAAGGACTTTTGGGCTTGGGCCGTGGCCCATTGTCTTTGCTGTCTCAATCGGGGTCACTCTACTCCGGCGTGTTCTCCTATTGTCTTCCGAGTTTTAAATCCTACTATTTCTCCGGGTCACTCAAATTGGGCCCAGTGGGCCAGCCCAAGAGCATTCGGACCACACCTCTTCTTCACAACCCGCACCGCCCTTCACTCTACTATGTCAACCTCACCGGAATCAGCGTGGGGCGCGTCTACGTCCCGTTGCCCACCGAGTTTTTAGAATTCAACCCGAACACTGGATCTGGAACCGTAATCGATTCGGGTACGGTGATAACCCGATTCGTTGAACCGGTTTACAACGCCGTTAGGGACGAGTTCAGGAAGCAGGTGACGGGGCCGTTTTCGAGCATTGGGGCTTTCGACACGTGTTTCGTGAAGACGTACGAGACGCTGGCGCCGTCAGTTACGCTGCACTTCACGGGTTTGGACCTGACGCTGCCGATGGAGAACAGCTTGATCCATAGCAGTGCGGGTTCCATGGCTTGCCTTGCGATGGCGGCGGCACCGAACAATGTGAACTCGGTGTTGAATGTTATTGCTAACTACCAGCAACAGAACCTGAGGGTTATGTTTGATATCGTGAATAACAAGGTTGGCATTGCCCGTGAGCTCTGTAACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00294	157713	159029	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000294s00011875.1	PF14543.1	TAXi_N	97	261	2.40E-28
Glyur000294s00011875.1	PF14541.1	TAXi_C	284	433	8.40E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	405.444
SRR1783600	control	445.937
SRR1783602	moderate drought stress	184.054
SRR1811619	moderate drought stress	184.107

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	63.638
DRR006520	Root Summer glycyrrhizin high producing strain	63.467
DRR006521	Root Winter glycyrrhizin high producing strain	1.002
DRR006522	Root Winter glycyrrhizin high producing strain	0.931
DRR006523	Root Summer glycyrrhizin low producing strain	75.162
DRR006524	Root Summer glycyrrhizin low producing strain	73.227
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.196
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.099

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	256.989
SRR2868004	Drought Stress (root)	199.988
SRR2967015	Control (root)	203.620

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.321
SRR9715740	Leaf	0.574
SRR9715741	Leaf	2.155
SRR9715739	Root	481.951
SRR9715742	Root	157.780
SRR9715743	Root	218.037

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.734
SRR8749028	MeJA induced 9h	0.613
SRR8749029	MeJA induced 9h	0.974
SRR8749030	Uninduced	0.137
SRR8749031	Uninduced	0.100
SRR8749032	Uninduced	0.147

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	221.774
SRR8400027	Control - Root	265.584