Gene detail

Gene detail information of Glyur000294s00011873.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24560.1	2.00E-149	ubiquitin-specific protease 16
NR	XP_004501631.1	0	PREDICTED: ubiquitin carboxyl-terminal hydrolase 16-like [Cicer arietinum]
Swissprot	tr\|Q9SB51\|UBP16_ARATH	0	Ubiquitin carboxyl-terminal hydrolase 16
trEMBL	tr\|K7KU50\|K7KU50_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G09821.1}

Sequence

Transcript Sequence

>Glyur000294s00011873.1
AATCAATCTCTCCTTCCGTTACCTTCATTTATTCCCTCTTTATTTACATTTACCGCGTTTTCTCTCTCTCTCTCTCTCTCACGAACCTTATTTTTGATCCCAACCGAACAAAACAAAACAAAACAAAACAATCTTGCTTCGCCTTGTCCGAATCCAACCACGAGAGTTGCGTTCCGTTCCGTTCCGTCCTTTTCAATTTTTCAGTGGCATCTTCAGTTTACTTGCAAACGCGAACAACATATAATATATATATATATATATATATAATATAACATTTCTAACTTTACGGATTCGATTTTTTTTTCTCGTTAATCTCACCGTCACGGGCTGCTTCATCTTTCGTCACCGTCCAATCACATATAAGGGATTGGGTTTTTAGGACTTTTCAGGTTGTTGTTACTCCTCCGTCGCCGTCGAGTGCTTCCGTGTGTGGTGGTGATGTAGCGGCATAGGGGTGTTTCGCCGACGTTGGATGTGTATCGGTGCGCAGGATAAATGCGTGTCACCGGGGATCTAGGGTTTTCGAGCCTGGTCCTTGTGGTGGTGGTTTGCGTGGTGTTGCCGGTGATCGGTTTTGTAATAATTCGCCGGAAATGGCAGCTTGCGGTGGCTAGGAACGAGGAGATCAAGAGGCTTTTGGTTTTGGCCGCCGAGGAAACTGCAAGGGCCGAGAGAGAAGCATCCTATGTGTACGGCGCGTCGGTTTCCGCCACTCACAACAACCAATGCGCTCTCTGCTATATTCCCGCCACCGCGCGTTGCGCTCAGTGCAAATCCGTTCGCTACTGTTCTGCTGAGTGCCAGACCGTTCATTGGCGTCAAGGTCACAAATTTGAATGCCGTCCTCTCAGCAAAATTCACCAGAGTGATGACGTAATTAGTGATATTGGCACGAAGGCAGCAGAACAAGAAGACTCTGGAATCCATGAGAAGCCTGAAAGTGAAGGCACAGAGTGTAAAGCGCCCTCTGAAAAACCCTCAATTTCTGATATCAGCCTTTCTCCCAAACTTTCATTTGGAAAGGATGATAATATTAGAGTTGGGTCCCTTGCAGAGGGAAATTTGACAGATTCTAATTCTGAATTATCCAGTAACTCATTTTCTGGATTCTCTGCTTCCACATGTTCTAGTGATTCATCTGATGATTCCTCTGTCTGTGAGAGTGTCATCTCAAATGAGCATGACAGATCAGAGGGACATATTTTTGTTGTTCCCACCCTTGACATTCCTGATAAAATTTCAAGCAATAATTGCATGGGTGTAGCCATGTCTTCTTCACCAAAGTTTGCTAGTTTGCTTGATTCAGTAGACGGTGTTTCTACAATTCATAACTTAAATCATATTACACCTGGTTCTAGTAAAGAAGAGAGAAAGCTTGCATCAAATGGTGCTTTGGGCTCGAGCACGTGGAAGGGGGTGAAAATTGAACCTTCTGGATTCTGGGATAAAGCTCTTCATTCAAGAGGGGTTAAAGATGATGCTAATAATGACACTTGTCTATCCCATTCCAATGAATCCACTGGTGAAAAGACTGATTCTGGACCTTCATTCCACTTTCCATTCAGTACCATGCCTCCTTTGCGTGTACAAGACACCAAGGCAAAGGATTCTTTGCCTGAAGATGCTCTTCCAAACTCTGTTGGGAATGATATTCCACATGCAGGATCAGCTTCATCAGAGAATGACAACAGCAAAGGTTCCAATTTTACGAGGCGTAGGACTCCCAGTGGTTCTGAGTCTGATCAATTGGAATCTAAACACAGCTCTGAGCCACCTTTATCTTCTATTTCCCCTCAATCCTCCAGTGTGCGCAAAGATCCAGGTTCTGCAGATTCTTTGAGCATCCATAACTTGCAATCAGCTGGCTCTAAGGCGGCAAATCATGTTGTGGACAGCCATTGCTGCACCTTGAAGTCCACTGATATTAGATGCCCGACATGTGGACTTGCTAATTCTAATTTAGCTTCTAGAACTGAAGAACATTCAAATCCCAGAACAAAACATGGGAATAACAGCAGTGAATGCAGGACTGTCAGTTCCTCTCAGGTTCCTAGCTGTTCTGCAAACTCTAAGAGTGGTTTGAAAACATCTGTTTTAAAAGTCGTTGATCAGTTTAGAGGATCAAATTTGTCAAAGCGCATTCCTTTAGCTGTTGGGAGTGATATTGCTGGAAGATACAGTGACAAGGGTCTTTTTGCATATGAATTGTTTGTCAAGCTTTATAACTTCAAGGTGGAGTTGCGGCCATTTGGTCTTATAAATTGTGGAAACAGTTGTTATGCTAATGCTATACTTCAGTGCTTAGCATTTACACCTCCCTTAACTGCTTATTTGCATCAAGGACTACATTCTAAATCATGTGCCAATAAAAAACGGTGTTTCACCTGTGAATTTGAAAGTTTGATTTTGAAGTCAGAGAGCACAAAATCTCCGCTGTCTCCTATGGGCATACTCTCACAACTACAGAGCGTTGGGAGTCAGCTTGGTAATGGTAAAGAAGAAGATGCACATGAATTTCTAAGGCATGTTATTGACACAATGCAATCCATTTGCCTTATGGAAGCTGGGGTTAAAGCTTCGGGTTCATTGGAAGAGGATACTACTTTAATGGGTCTAACATTTGGAGGTTACCTTCGATCAAAGATAAAATGCACGAAATGTGGTGGGAAGTCTGAGCGTCAGGAAAGGATGATGGATCTAACTGTTGAGATAGAAGGGGAGATATCAACGCTGGTGGAGGCCCTTCGACGGTTTACAAGCACTGAGACTTTGGATGGAGAAAATAAGTACCACTGTGTCAGATGTAAATCTTATGAGAAGGCCAAGAAGAAGCTAACAGTTTCAGAGGCACCTAATATTCTTACAGTTGCATTAAAGAGATTTCAGTCTGGAAAATTTGGGAAGCTCAACAAGCCTATTCAATTTCCTGAAACACTTGACTTGGCACCTTTTATGAGTGGGATTAGTGATAAGGCACCCATATATAGATTGTATGGGGTAGTTGTTCACTTGGATATTATGAATGCTGCCTTTTCGGGTCACTATGTGTGCTATGTGAAGAATATCCAAAACAAGTGGTTCAAGATTGATGACAGTGTGGTGACACCTGTTGAATCGGAGAGAGTCTTGACAAAAGGAGCATATATGCTTTTTTATGCACGGTGCTCTCCAAGGGCCCCAAGATTAATTAGGAACAGGATACTATCCCCAGATTCAAAGAGTAAAGTCAATGGAAAGACTCTTGCAACGAAAGCAAGACANGTGTCTACAAATTCCGGCGCTGCTGAACATATCAGTTGTTTGATTTCTCCAGATGACTCATCAGCTTTGGAGGCTTTCTATTCGAAGTTTCACCACCTGAAAAGGATTTTAGAAGAAGACTCATCAAGTGATAATTCATCCCTTTTCAGCAGCAATTCGGATGAAGGTTCTTGCAGTACCCGTGATTCAACCAGCACAGATGACTTGTCCGATTATATTTTTGGTGATTCAGGGAATGGCTGGAGTAGCATGTGGAGGAATTCAGATTCTGGCACATCCTCATCCTCCTCATCTCCCTTGAACTCTAGACATTCACCCCTATCTGATATGGACCGATATGATTCAGTTTCTCCAGATGCAACTGGTCTGCAAATTCCCACAAATTCAAGTGCGGAGATAGACGGTTCTTTATACAGGAGCAGACCAGGGGATGTTGAAAGGAGGGGTGTAGGTGTTTCTCTTTTGCATTCTGACTCAACTTTACAGCATAGAAAGTTAAATAGCGGTAGCATTAACAGCAATATTAGTAGTAGCAGCAGTAGGGGTACTGACTCGTTTCTGAAACTAGGATCTAACCATTTTAATAGTATGAACTCTGGTNTATCATGTAGAAAGCCAAGGAAAAGAACGGATTGAAAATTTTATCAATAGGGAGCTCCGGTGCAGTAAATAAAGAGGGATGCTATCCGTAAATGTACCCTTGGAGGTGGCGTTCTTTTTACAAAAGAATTTAGCTACACCATTTTG

Protein Sequence

>Glyur000294s00011873.1
MRVTGDLGFSSLVLVVVVCVVLPVIGFVIIRRKWQLAVARNEEIKRLLVLAAEETARAEREASYVYGASVSATHNNQCALCYIPATARCAQCKSVRYCSAECQTVHWRQGHKFECRPLSKIHQSDDVISDIGTKAAEQEDSGIHEKPESEGTECKAPSEKPSISDISLSPKLSFGKDDNIRVGSLAEGNLTDSNSELSSNSFSGFSASTCSSDSSDDSSVCESVISNEHDRSEGHIFVVPTLDIPDKISSNNCMGVAMSSSPKFASLLDSVDGVSTIHNLNHITPGSSKEERKLASNGALGSSTWKGVKIEPSGFWDKALHSRGVKDDANNDTCLSHSNESTGEKTDSGPSFHFPFSTMPPLRVQDTKAKDSLPEDALPNSVGNDIPHAGSASSENDNSKGSNFTRRRTPSGSESDQLESKHSSEPPLSSISPQSSSVRKDPGSADSLSIHNLQSAGSKAANHVVDSHCCTLKSTDIRCPTCGLANSNLASRTEEHSNPRTKHGNNSSECRTVSSSQVPSCSANSKSGLKTSVLKVVDQFRGSNLSKRIPLAVGSDIAGRYSDKGLFAYELFVKLYNFKVELRPFGLINCGNSCYANAILQCLAFTPPLTAYLHQGLHSKSCANKKRCFTCEFESLILKSESTKSPLSPMGILSQLQSVGSQLGNGKEEDAHEFLRHVIDTMQSICLMEAGVKASGSLEEDTTLMGLTFGGYLRSKIKCTKCGGKSERQERMMDLTVEIEGEISTLVEALRRFTSTETLDGENKYHCVRCKSYEKAKKKLTVSEAPNILTVALKRFQSGKFGKLNKPIQFPETLDLAPFMSGISDKAPIYRLYGVVVHLDIMNAAFSGHYVCYVKNIQNKWFKIDDSVVTPVESERVLTKGAYMLFYARCSPRAPRLIRNRILSPDSKSKVNGKTLATKARXVSTNSGAAEHISCLISPDDSSALEAFYSKFHHLKRILEEDSSSDNSSLFSSNSDEGSCSTRDSTSTDDLSDYIFGDSGNGWSSMWRNSDSGTSSSSSSPLNSRHSPLSDMDRYDSVSPDATGLQIPTNSSAEIDGSLYRSRPGDVERRGVGVSLLHSDSTLQHRKLNSGSINSNISSSSSRGTDSFLKLGSNHFNSMNSGXSCRKPRKRTD

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00294	138575	145946	-

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

molecular_function
GO:0036459 thiol-dependent ubiquitinyl hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000294s00011873.1	PF01753.13	zf-MYND	78	115	1.10E-10
Glyur000294s00011873.1	PF00443.24	UCH	584	887	3.20E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.980
SRR1783600	control	23.228
SRR1783602	moderate drought stress	22.558
SRR1811619	moderate drought stress	22.394

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.015
DRR006520	Root Summer glycyrrhizin high producing strain	19.944
DRR006521	Root Winter glycyrrhizin high producing strain	13.311
DRR006522	Root Winter glycyrrhizin high producing strain	13.157
DRR006523	Root Summer glycyrrhizin low producing strain	21.736
DRR006524	Root Summer glycyrrhizin low producing strain	21.755
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.730
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.461

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.933
SRR2868004	Drought Stress (root)	26.914
SRR2967015	Control (root)	27.284

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.768
SRR9715740	Leaf	25.212
SRR9715741	Leaf	24.473
SRR9715739	Root	7.247
SRR9715742	Root	26.641
SRR9715743	Root	21.405

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.276
SRR8749028	MeJA induced 9h	21.816
SRR8749029	MeJA induced 9h	16.494
SRR8749030	Uninduced	17.458
SRR8749031	Uninduced	16.801
SRR8749032	Uninduced	21.377

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.602
SRR8400027	Control - Root	30.259