Gene detail information of Glyur000294s00011872 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G49700.1 | 2.00E-54 | Predicted AT-hook DNA-binding family protein |
| NR | XP_004501632.1 | 2.10E-142 | PREDICTED: putative DNA-binding protein ESCAROLA-like [Cicer arietinum] |
| Swissprot | tr|Q9S7C9|ESCA_ARATH | 1.00E-33 | Putative DNA-binding protein ESCAROLA |
| trEMBL | tr|I1K9M7|I1K9M7_SOYBN | 2.00E-135 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G09810.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00294 | 127257 | 128138 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000294s00011872.1 | PF03479.10 | DUF296 | 110 | 227 | 6.60E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.152 |
| SRR1783600 | control | 29.496 |
| SRR1783602 | moderate drought stress | 72.425 |
| SRR1811619 | moderate drought stress | 68.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.982 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.065 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 255.409 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 251.701 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.610 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.017 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.543 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.242 |
| SRR2868004 | Drought Stress (root) | 6.103 |
| SRR2967015 | Control (root) | 4.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.950 |
| SRR9715740 | Leaf | 11.419 |
| SRR9715741 | Leaf | 35.843 |
| SRR9715739 | Root | 81.980 |
| SRR9715742 | Root | 29.949 |
| SRR9715743 | Root | 38.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 217.651 |
| SRR8749028 | MeJA induced 9h | 781.588 |
| SRR8749029 | MeJA induced 9h | 526.280 |
| SRR8749030 | Uninduced | 191.107 |
| SRR8749031 | Uninduced | 420.057 |
| SRR8749032 | Uninduced | 513.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.784 |
| SRR8400027 | Control - Root | 29.707 |