Gene detail information of Glyur000294s00011869 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05430.1 | 2.00E-04 | Tudor/PWWP/MBT superfamily protein |
| NR | AFK48621.1 | 8.66E-42 | unknown [Lotus japonicus] |
| trEMBL | tr|I3T7X9|I3T7X9_LOTJA | 3.00E-42 | Uncharacterized protein {ECO:0000313|EMBL:AFK48621.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00294 | 117742 | 118575 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000294s00011869.1 | PF00855.12 | PWWP | 32 | 111 | 1.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.247 |
| SRR1783600 | control | 2.275 |
| SRR1783602 | moderate drought stress | 2.283 |
| SRR1811619 | moderate drought stress | 1.532 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.049 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.625 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.431 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.567 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.395 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.020 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.697 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.547 |
| SRR2868004 | Drought Stress (root) | 15.701 |
| SRR2967015 | Control (root) | 14.577 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.180 |
| SRR9715740 | Leaf | 15.206 |
| SRR9715741 | Leaf | 10.432 |
| SRR9715739 | Root | 1.226 |
| SRR9715742 | Root | 4.593 |
| SRR9715743 | Root | 3.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.740 |
| SRR8749028 | MeJA induced 9h | 21.242 |
| SRR8749029 | MeJA induced 9h | 18.295 |
| SRR8749030 | Uninduced | 10.318 |
| SRR8749031 | Uninduced | 4.664 |
| SRR8749032 | Uninduced | 9.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.440 |
| SRR8400027 | Control - Root | 14.533 |