Gene detail

Gene detail information of Glyur000294s00011862.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G22540.1	2.00E-44	K-box region and MADS-box transcription factor family protein
NR	NP_001239872.1	4.05E-113	uncharacterized protein LOC100776749 [Glycine max]
Swissprot	tr\|Q9FVC1\|SVP_ARATH	2.00E-78	MADS-box protein SVP
trEMBL	tr\|C6T8M2\|C6T8M2_SOYBN	2.00E-113	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G10020.2}

Sequence

Transcript Sequence

>Glyur000294s00011862.1
CGATAATTAAATAAATATAGTTTCCAATAATGTCTCCTGCTACCTAGTCAGGTTTTGACTGCCCGGTCATAATCCTAACCCCGATTAGGTAAAGACAATATGAAAAAACAAAGTAAATATAATTAGCAACAAAATAGAAAGAGTCCCTCGTTTCATTCCTTTTCTTTTAGTTTAGCTTAGCTATAAAGGGAATGCCTTCCTTTCCTTTTCTTGGTATGATAAAAACCCAACCAACCACCACCATTCCAATCAACCCTCCCAAACCTCCTCCTCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCCTCTTTGTATTTAGAAGTACCCGTCGTTCTCTGATTGAAACCAGAAAGGAGGTAGGTAGGTAGTTGGAGATGAAGAGGACGAAGATTAAGATAAAGAAGATCGACAACATAACGGCGAGGCAAGTAACATTCTCGAAGAGGAGGCGAGGGTTGTTCAAGAAAGCTCAAGAGCTTTCTGTGCTGTGCGATGCTGAGGTTGGTCTCATTGTTTTCTCAGCTACCGGCAAGCTCTTTGATTATGGCAGCTCCAGTGCGAAGGACATAATTACAAGGTACAATACGCACGCCCATGGCATCAACAAATTGGACACACCATCTCTAGAACTGCAGCTAGAGGCTAGCAGTAGCGCCCAATTGAGTAAGGAAATTGCAGATAGAACCGAACAACTAAGGCGGATGAAAGGGGACGATCTTGAAGGACTAGGCCTAAATGAGTTACAGCAGCTGGAGAAAACACTTGAAACAGGACTCACCCGTGTGATTGAGACTAAGGAAAAGCGGATTATAAGTGAGATTTCTGAACTTCAGAAAATGGGAACGGTGTTGGAAGAAGAGAACAAGCGGTTAAAGCAAAAGATGGTGGCTATGCTGGGAAAAACAAATAGTCCTAATTTTCCAGTGGAGTCGGATATTGGAATATTGCAGCAGGAAGAANGGGTGTCATCATTAGAGTCGTCTATGAATAACATTAGTAGTTGCGTCAGTGACCCTCCTCTTGAGGGTGATTCCTCCGACACATCCCTTAAGTTAGGGTTGCCCTTCTCTAACTGAATATGTAGTAGTGGCTGTTCGTATAAGAGTTTCTCTCAATGCAAAACTAGAAGAGAGAAGCTCATGGATAAAAGGTGTTAATTACGGGATCGATGTGATATTTTCCAGTGCCTGAAATCTAAACAAACCAGACTTGTAATATATGGTGGAAAGCTTCTTGTCTTTTTTTTTTTTTTTGACGTTAAGAATTTTTCTTAATTAATTAAACTGCATGCATGTGTCTGTACTAATCACAATCATGCATATGTATGATTTTGTTGGTCTTGCTATTTGTGATTTCACATGTGACTAGTGAAATCAGAAGGTATAATAGTAATTGATTTGGTGTAAAAATGATTCTTAACACTCGAAAAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00294	86950	93950	+

Gene family

Gene family	subfamily
Transcription Factors Family	MIKC
EAR motif-containing Proteins	MIKC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000294s00011862.1	PF00319.13	SRF-TF	9	58	1.10E-23
Glyur000294s00011862.1	PF01486.12	K-box	91	170	3.20E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.564
SRR1783600	control	5.724
SRR1783602	moderate drought stress	6.778
SRR1811619	moderate drought stress	6.969

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	51.167
DRR006520	Root Summer glycyrrhizin high producing strain	49.511
DRR006521	Root Winter glycyrrhizin high producing strain	51.960
DRR006522	Root Winter glycyrrhizin high producing strain	48.698
DRR006523	Root Summer glycyrrhizin low producing strain	46.496
DRR006524	Root Summer glycyrrhizin low producing strain	41.324
DRR006525	Leaf Summer glycyrrhizin high producing strain	47.032
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.842

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.742
SRR2868004	Drought Stress (root)	37.502
SRR2967015	Control (root)	39.801

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	58.333
SRR9715740	Leaf	65.416
SRR9715741	Leaf	66.550
SRR9715739	Root	0.825
SRR9715742	Root	18.953
SRR9715743	Root	16.071

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.395
SRR8749028	MeJA induced 9h	0.080
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	1.612
SRR8749031	Uninduced	7.117
SRR8749032	Uninduced	2.423

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.459
SRR8400027	Control - Root	4.312