Gene detail

Gene detail information of Glyur000294s00011857

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G58200.2	0	MSCS-like 3
NR	XP_003602909.1	0	MscS family inner membrane protein ynaI [Medicago truncatula]
COG	YP_391564.1	2.00E-26	MscS mechanosensitive ion channel [Thiomicrospira crunogena XCL-2]
Swissprot	tr\|Q8L7W1\|MSL3_ARATH	0	Mechanosensitive ion channel protein 3, chloroplastic (Precursor)
trEMBL	tr\|G7J535\|G7J535_MEDTR	0	Mechanosensitive ion channel-like protein {ECO:0000313\|EMBL:AES73160.1}

Sequence

Transcript Sequence

>Glyur000294s00011857.1
GAATTCAACAAACCCGTAACTTGGAAAGAAGAAGCCTTTACTTAGCCAAAGCCAACCATCTTTGGCTTTTCTACCACTGTCTCCTTCACGACATTCAAATACATACCCACAAGTTACAACAACAAAATCTGTTTAATTTCTTTCTCTCATGCTCTGAGGGGTAAACTCGTAATGTTAGTTTTCATATCTTCGGGAAGAACCTCCATTCGTTTCTGGCGAAAATAATCTTATCTTCCAGGAACCTTGGAATAATACCATTCAGGAACCGAGGCATCGAGTTGCAAGGGTAATTGAACTGGGGTTTTCATCTGCTAACTGATTGCATGACCTTGGACTTCAACGCTTCAATTTCAACAATGGTCTACCCAGGTTCAATGCAATTGTCTCGTGACGTTAGGCTCCACAGTAACAGTGGATTCCGTAGTTTCCATCATAATCCGGTGGGGGTTGGTCGATTACATTTGGTCACCATAAATCTTCTACCACGTACTTTGAAGCAAGATTCTTTGGCATTCCATCTTTTGAATAGAGTACATGCCCCAATAAGGCACGCGCCTTCGAGATGCAATGTTTTCGTATGTCGGTCTTTCTTAGTTCCAGGTGGAGGGAGTGGGACTCCGCTCATGAAACCTGCTAGTGTTTTTTTAACAAGGTCATGTGATTCTTTACTGGGAAACCCTATTTTGCCTCGATTGATCCCAGCCCTTGGTATTATTGCCTTTGCTGTTTATGGTCTTGAGCCACTCCTTCGCCTCAGCAGGATTCTATTTCTTCAAAGGACCGACAGTAGTTGGAAGAAAAGTAGTTCGCGATATATTATGACATCTTATTTTCAGCCATTATTGTTGTGGACTGGGGCCATGCTCATATGCAGGGCATTAGATCCATTAGTCCTACCATCTGAGACTAGCCAGGCCGTGAAGCAACGGCTGCTTAATTTTGTGAGATCTTTGTCAACAGTGATCTCATTTGCTTACTGTTTATCAAGCTTAATTCAACAAGCACAAAAATTCTTTTTGGAGGCAAATGAATCCAGTGATGCAAGAAATATGGGCCTTGATTTTGCTGGGAAGGCAGTATACACTGCCGTATGGGTTGCTGCTGTGTCATTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAAGTGGTTAACTGCTGGTGGTTTGGGCACAGTATTGCTCACTCTTGCTGGTCGTGAGATATTTACGAACTTTCTATCAAGTATAATGATCCATGCAACTCGGCCATTTATATTGAATGAGTGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGCACAGTTGAGCATGTAGGCTGGTGGTCACCAACCATTGTGAGGGGTGATGATCGTGAGGCAGTTCATATTCCTAATCACAAGTTCACTGTAAATGTTGTGAGAAATCTGAGTCAGAAATCTCATTGGCGTATCAAGAGTTATATTGCTATCAGTCACTTGGATGTTAACAAAATTAATCTGGTGTCATCTCCATTTCATCTTTTCATGCAGAATATTGTAGCTGATATGCGCAAGGTTTTGGCTAAGAATCCTCAAGTAGAGCAGCAGAAATTGCACAGAAGGGTCTTTTTGGAAAATGTCAATCCTGAAAATCAGGCTCTTATGATATTGATCTCTTGCTTTGTGAAAACTTCCCATTTTGAAGAGTACCTCTGTGTTAAGGAGGCAATCCTATTGGATCTTCTCAGAGTTGTAAGTCATCATCGAGCCCGGTTAGCCACTCCCATCCGCACAGTTCAGAAAATATACAGTGAGCCTGACTCGGAAAATGTTCCCTTTGGGGATACCATTTTCACTCGATCCAGAGCAGCAGTAAATCGCCCTTACCTACTGATAGAACCACCATATAAAGTTAATGGTGAAGAAAAAGTTAAGCCTTCAACTCGTTCAACTNGTGCAAATGAGGAAAAAGATGTCAAGAATGATGAAACCGTGGCATCTGACTCCAAAGGAGATGAGAATCTTGCAGCGACATCAGCCTCTCCACCCGGTGTAAACTCCAAGGATAAATCNAAGTCAAATTCTGAGGCCCAAATCCAGAATATAGATTCTGATAGCTCAGTTGAGAAGACCTCCAAAACCATGCAGCTGAAAAAAGAAAGTGCAGGAGATGTAGGAAAGGGAAGTAAAATTCCTGCATCTAAAAACCTTGCACAAAGTGCTGTACCTGAAACTTCTCCTGTTGCTTCCCATGAGTCTGGAAGGGGAGAGACTGCTTCTGCTACTTCACAGTCAAAGCAAGATGAAGAGAAATCTGCTGTGACTTCACCATCAGTTAGGCCTTCCTTAGAAGAGAACATTCTTCTTGGGGTTGCCCTTGAAGGCTCAAAACGAACTCTTCCAATTGAGGAAGAAATAACTCCACCTCCTGTCTCGTCAGAGTCACAAGAATTTGCGGTCCAACGGAATGGGNGTGGACCTCCTGCTAACAAGGATAAGAAGGATGGTTCGATGTCTTCATTTCCAACTACTAAGCAGAATGACTAGATTGGTAGCTAAATAAGCAAAGTAAAAGTTGATATTTTAGTATATGCCTTCGGTTAAAGTTATGCTAAAAAAATGATCCAGCTGTCTTTTTTAAGTTGGAATTGTGCATTGTATTCTCCCTAGCTGATTGCCCATGTATGTACATAATTCATGATTTGCATTACTGTATCATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00294	63380	70208	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000294s00011857.1	PF00924.13	MS_channel	250	469	1.90E-25
Glyur000294s00011857.2	PF00924.13	MS_channel	250	458	5.10E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.586
SRR1783600	control	1.554
SRR1783602	moderate drought stress	2.621
SRR1811619	moderate drought stress	2.612

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.150
DRR006520	Root Summer glycyrrhizin high producing strain	1.202
DRR006521	Root Winter glycyrrhizin high producing strain	1.746
DRR006522	Root Winter glycyrrhizin high producing strain	1.873
DRR006523	Root Summer glycyrrhizin low producing strain	0.530
DRR006524	Root Summer glycyrrhizin low producing strain	0.529
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.300
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.437

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.559
SRR2868004	Drought Stress (root)	11.379
SRR2967015	Control (root)	10.730

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.339
SRR9715740	Leaf	67.574
SRR9715741	Leaf	58.474
SRR9715739	Root	0.776
SRR9715742	Root	1.575
SRR9715743	Root	1.906

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.598
SRR8749028	MeJA induced 9h	6.299
SRR8749029	MeJA induced 9h	3.367
SRR8749030	Uninduced	12.832
SRR8749031	Uninduced	20.620
SRR8749032	Uninduced	14.548

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.220
SRR8400027	Control - Root	4.302