Gene detail

Gene detail information of Glyur000294s00011853

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10920.1	0	L-Aspartase-like family protein
NR	XP_003522764.1	0	PREDICTED: argininosuccinate lyase, chloroplastic isoform X1 [Glycine max]
COG	YP_007466914.1	1.00E-165	argininosuccinate lyase [Desulfocapsa sulfexigens DSM 10523]
Swissprot	tr\|Q9LEU8\|ARLY_ARATH	0	Argininosuccinate lyase, chloroplastic (Precursor)
trEMBL	tr\|I1JV68\|I1JV68_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G10100.1}

Sequence

Transcript Sequence

>Glyur000294s00011853.1
GGCCAAACAAGGTGGCAGTGTNGCACACACTCAGAAACGCACTTACAATTTGCATTGTGCCAAAAAGTAAAAACCCTGAAAATTGGCCATGGTGGTGCTGTCCGCAGGTGCGTTGTCTTCAAGCTTCACTCCACTTTCACTTCCCAACCACCACTCCTCCCTTCTTCCCATAACTCGAACTCAACTCTGTCGCGCATTCCCTCCTCCNCATAGGATCACCATGGAGGCCCAAGCCCAAGCCCAGCCCAAGGAGGCCAAACTGTGGGGTGGAAGGTTCGAGGAGGGCGTAACGGACGCCGTCGAGCGCTTCACGGAGTCCGTCTCCTTCGACAAGCAGCTCTACAAGCATGACATAATGGGAAGCAGAGCACACGCTTCAATGCTCGCTCACCAGGGTTTGATTAGCGTGAGTGATAGGGATTCTATTATTAAAGGGTTGGATGAGATAGAGAGGCGAATTGAGAATAACGAGTTTAATTGGAGAGCTGACAGAGAGGACGTGCACATGAACATTGAAGCAGCACTCACCGACATGATTGGTGAGCCTGCCAAGAAGCTACACACCTCTCGGAGCCGGAACGATCAGGTTGTGACCGATTTGCGCCTCTGGTGTCGCGATGCCATTGATAGTATCCTTGCAGGCATGAGACAGCTTCAGGTCTCGCTGCTGAGGCTGGCTCTCAACAATGAGGGTCTCATTGTTCCCGGGTATACCCATTTGCAGCGCGCACAACCCGTTTTGCTCCAACACCTTCTGCTCGCTTATGTTGAGGAGATTGAGCGCGATGCTGGTCGTTTGATAGATTGTAGGGCTAGGATGAATTTCTGCCCTTTAGGGGCTTGTGCATTGGCTGGTACTGGNCTTCCCATTGATCGATTCATGACTTCGGATGCCTTAGGATTCACGGCTCCAATGAGGAATAGTATTGATGCAGTTTCTGATCGAGATTTTCTACTGGAGTTTCTTTCTGCCAATGCTATCACGGCAGTGCATCTTTCTCGCCTTGGTGAAGAATGGGTATTGTGGGCTTCAGAGGAGTTTGGATTTATCACGCCGAGCGACTCAGTTTCAACGGGAAGCAGTATAATGCCTCAGAAAAAGAATCCGGATCCAATGGAACTTGTTCGCGGGAAGTCTGCTAGAGTCATAGGAGGTTTGGTTACTCTTCTCACATTGTGCAAAGGACTTCCCCATGCTTACAATCGTGATTTGCAGGAAGACAAAGAACCAGTATTTGACAGTGTTAAAACTATTTTGGGGATGCTTGAGGTCTCAGCAGAATTTGCATTGAACATTACTTTCAATCGGGAAAGAATACAGAAGTCTTTACCTGCCGGTTATCTTGATGCAACCACACTTGCTGATTATCTTGTTAACAAGGGAGTGCCATTTAGGACGTCTCATGATATAGCTGGAAAATCTGTTGCTTTATGTACATTAAAGGATTGCCAACTGCTGGACTTGAGTCTTGATGAGCTGAGAAGTATAAATCCAGTCTTTGACCAGGATGTGTATGAATATCTTGGAGTAGAAAATGCGGTCCAGAAATTCAGTTCTTATGGTTCCACTGGATCTGCATGTGTTGCCGACCAACTGGATTATTGGGTAAAAAAACTTGAAATGAAGTTAAGATTATCGTAATTGTCATGAAATTCTCATAATGCCAGGGAGGCCGTCTTTTAAGACATGGAATAATAGCCCTCTGCTTTCCAAAGATCCTGCAGCATGTTTGAATAGTTCAGGGTCACTGAATATTTATGGTTGTATCTTTAAATATTTGTCCTTATAAGCAAATTAGTCAGGGTTACTGAATAGGTAGTTTCAGAATCTCATACATGCATATGGTTGAAGTTATGAGCTTCTTGCATTATACATTACCTGTTGGACAGTAATTTCAGCATGCAGTGTGAATTTATAGGGAATTTATATCTACACATACATACTTTACTATCTGCACATACATGTCTGCGGAACTATTAGTTCCGCGGGTGTATTTTTTTTTCAACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00294	39677	42991	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01755	argH, ASL	EC:4.3.2.1	Biosynthesis of amino acids	map01230
			Alanine, aspartate and glutamate metabolism	map00250
			Arginine biosynthesis	map00220

Gene Ontology

biological_process
GO:0042450 arginine biosynthetic process via ornithine

molecular_function

GO:0003824 catalytic activity

GO:0004056 argininosuccinate lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000294s00011853.1	PF00206.15	Lyase_1	61	355	5.50E-71
Glyur000294s00011853.1	PF14698.1	ASL_C2	418	487	4.90E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	113.282
SRR1783600	control	113.209
SRR1783602	moderate drought stress	106.208
SRR1811619	moderate drought stress	106.058

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	119.900
DRR006520	Root Summer glycyrrhizin high producing strain	118.527
DRR006521	Root Winter glycyrrhizin high producing strain	14.119
DRR006522	Root Winter glycyrrhizin high producing strain	14.090
DRR006523	Root Summer glycyrrhizin low producing strain	65.754
DRR006524	Root Summer glycyrrhizin low producing strain	66.611
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.556
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.738

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	61.994
SRR2868004	Drought Stress (root)	47.869
SRR2967015	Control (root)	47.297

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.352
SRR9715740	Leaf	19.615
SRR9715741	Leaf	13.548
SRR9715739	Root	94.322
SRR9715742	Root	92.421
SRR9715743	Root	90.394

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.990
SRR8749028	MeJA induced 9h	19.048
SRR8749029	MeJA induced 9h	18.545
SRR8749030	Uninduced	4.838
SRR8749031	Uninduced	3.523
SRR8749032	Uninduced	6.092

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	121.067
SRR8400027	Control - Root	119.646