Gene detail

Gene detail information of Glyur000293s00015239

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60370.1	9.00E-58
NR	XP_003592553.1	6.35E-123	Defects in morphology protein-like protein [Medicago truncatula]
COG	YP_684474.1	1.00E-11	hypothetical protein LRC132 [Methanocella arvoryzae MRE50]
Swissprot	tr\|Q9FKK6\|EXO5_ARATH	4.00E-75	Exonuclease V, chloroplastic (Precursor)
trEMBL	tr\|G7IA65\|G7IA65_MEDTR	3.00E-123	Defects in morphology protein 1 {ECO:0000313\|EMBL:AES60682.1}

Sequence

Transcript Sequence

>Glyur000293s00015239.1
ATGATGATGCCATACTTTATCAACGTAACATTGGGGAAGTATGGTAGTTTCAGCTCTAAATGTGTGATTAAGAAGAAACTTGCTGCTGGATCAGCAGCCATCATGGCCGGAACATCCTCCAAGATCCCAATTGAGATCGTAAGCGATGAAGAGATGGTTTCGATTAAAGCTGCTTTAGCTGCTGCAGCTTATTCTCCTGTAACTCCAGCTGCTGTTCCTGCAGTACATTCACCCGCATCGGCCCCTCGGTCTCACACAAATGGCGGGTCCATTCAGTCAGTTCCAGTTAAGGCCAAGAGAAGGTTATTCATGTGTTCCGAACCTGACATAGAGGATTTTGGCAATTTGGTTACTACAAGGAAGAAGAAGTCCAGAGCAGCCGACACGTTACTGCACCGGTTTAGGAGCAAGAGGGGCTTGTTTGTCACTGATGTTACCAAGACAGAATGGTGTGACAAGCAAATGGAGTTCTCTCTCTTTTCTGAAGAATGGAAGAACAATGAAGCCATGCCTGGTGAAGAGTGGTGCGGCCAAAAACAAATCGATTCGCCTCTTGTTTTTAGAGGAGGAAGGAGGAACATTGAAGCTATGAGAGCTGAAAGTGATGATCATAGACCAGTGCTAGTGGAAACAAAGACTCGTTACCAAGATACAGTTCCTGGAGAACCACAAAAGAGAAACGGAAGGATTCAATTGATGTGTTACAAGTATTTGTGGGACAACTTAGTTTCTCATGCTCATCATGATTTCCCTTCTAAGCAATTGTTTCATTATTTTGAGTTAAATCCTCAACGTGCTCTATGTGGAGATCTAAAAGCAGCATGTGCTTCCTCTGGATTCTCAGCATTGACCCTTGATGATGTGGTGACATGTTACCAGAACACGTGTCAGATGCTGCCCCCTGCCAATGATGAGCTAGTGTTGAGATATGAGTCTCAGAGAGATCAGTCACTGCTGGATGAAGATAAGTTTGCATATGATGAGGGTTGGATAAAGAATGAAATCCGGTGTTGTCTTGAGTTTTGGCTTGGACAGAGAGAAGCCAATTATGTTGCTGAGGAAGAGCAATGGAAATGTGGGTACTGTGAGTTTGCTTCTGAGTGTCCTGCATACATTGGTTCTGAGAGCACAGAATCCCTTTCAGAGGATGACTCAAGTGATTACTATTACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00293	136517	139560	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0045145 single-stranded DNA 5'-3' exodeoxyribonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000293s00015239.1	PF09810.4	Exo5	204	370	4.10E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.880
SRR1783600	control	12.673
SRR1783602	moderate drought stress	6.041
SRR1811619	moderate drought stress	5.961

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.126
DRR006520	Root Summer glycyrrhizin high producing strain	12.236
DRR006521	Root Winter glycyrrhizin high producing strain	0.155
DRR006522	Root Winter glycyrrhizin high producing strain	0.152
DRR006523	Root Summer glycyrrhizin low producing strain	12.652
DRR006524	Root Summer glycyrrhizin low producing strain	13.060
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.534
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.491

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.197
SRR2868004	Drought Stress (root)	7.811
SRR2967015	Control (root)	8.521

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.806
SRR9715740	Leaf	6.874
SRR9715741	Leaf	10.820
SRR9715739	Root	4.018
SRR9715742	Root	23.354
SRR9715743	Root	21.224

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.173
SRR8749028	MeJA induced 9h	0.744
SRR8749029	MeJA induced 9h	0.879
SRR8749030	Uninduced	1.976
SRR8749031	Uninduced	1.712
SRR8749032	Uninduced	5.485

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.633
SRR8400027	Control - Root	8.525