Gene detail

Gene detail information of Glyur000293s00015236

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G40940.1	7.00E-52	putative fasciclin-like arabinogalactan protein 20
NR	XP_004496989.1	6.38E-179	PREDICTED: putative fasciclin-like arabinogalactan protein 20-like [Cicer arietinum]
Swissprot	tr\|Q9FGW0\|FLA20_ARATH	4.00E-68	Putative fasciclin-like arabinogalactan protein 20
trEMBL	tr\|G7IAT5\|G7IAT5_MEDTR	1.00E-172	Fasciclin-like arabinogalactan protein {ECO:0000313\|EMBL:AES62806.1}

Sequence

Transcript Sequence

>Glyur000293s00015236.1
ATGGCGCCGTTCCTCCTTCTTCTCTCGTTCTTGCTTTTCTTCTTCTTGTTCTTCTCTCTCTGCGGTGCTCTTCCCCGCGAATCTATATTCGACGCCGCCGATGTTCTCTCCGATTCAGGTTTCGTCTCCATGGCCCTCACGCTCGAAATCGTGGCCGAAACCCTTCTCGAACAGTCCTCTTCCGCCACCGTCTTCGCCCCCTCCGATTCCGCGTTCAAGAAATCCGGCCAGCCCTCCCTCGATCTCCTTCGCTTCCACTTCGCTCCCCTGCCGCTTCCGCCGGCGAGTTTTCGTCTACTCCCCGCTGGCGCCAAGATTCCGACGATGCTCTCCGGCCAGTCCCTGACCGTCACCACGTCGCCCTCCGATCGCGTTACCTCTCTCAACAACATCAAGATCAGTGGATCCCCGATCTACGACGACGGATTTCTCCTAGTCTACGGAACCGATAGGTTCTTCGATCCTAGTTTTCAGTACGCCGGTCCCAATCAGAGACCTGATCCCTCCTCGTGTACGGCGAGGAATCGCACTCGGAGTTCCTCTAATTCCTTGGACCAAGCCATCGAAACCCTAAAATCTGGCGGCTACTCTGCCGTGGCCTCGTTTCTCGGAATGCAACTCTCCGGCGTCTCGGACCGGAATGGAATCACGGTGTTTGCTCCGGCGGATGAGATGGTGATGAGCCGCATCGGGGATTTCGAAGACTATCCTTCGTTCTTTCGCCGCCACGTGGTTCCCTGCAAGCTTCTGTGGAACGATCTGGTGGATTTCGCCGACGGTTCGGAGCTGCCGACGTTCTTGGAAGGGTTCTCCATCAACATCACCAGATCCGGTGGAGTTTTGATTCTCAACGGTGTTCCGGTTTTCTTTCCGGATATATTCTTCAACGACAGGGTGGTTGTTCATGGCGTCAATGATGCTCTGGTGGCGCAAGACAANGCTCGTCGAGTTGTGGACTCTTCTTTCTCTTTCTCTAACGCCGATGATGATCACAATGTGTTTGACCCTAGTGAATTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00293	127675	128694	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000293s00015236.1	PF02469.17	Fasciclin	49	133	5.70E-05
Glyur000293s00015236.1	PF02469.17	Fasciclin	208	309	4.40E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.458
SRR1783600	control	2.333
SRR1783602	moderate drought stress	1.089
SRR1811619	moderate drought stress	0.947

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.745
DRR006520	Root Summer glycyrrhizin high producing strain	0.756
DRR006521	Root Winter glycyrrhizin high producing strain	0.219
DRR006522	Root Winter glycyrrhizin high producing strain	0.320
DRR006523	Root Summer glycyrrhizin low producing strain	0.580
DRR006524	Root Summer glycyrrhizin low producing strain	0.676
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.174
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.362

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.631
SRR2868004	Drought Stress (root)	1.017
SRR2967015	Control (root)	1.071

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.276
SRR9715740	Leaf	0.124
SRR9715741	Leaf	0.064
SRR9715739	Root	2.984
SRR9715742	Root	0.745
SRR9715743	Root	0.853

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.805
SRR8749028	MeJA induced 9h	1.681
SRR8749029	MeJA induced 9h	0.910
SRR8749030	Uninduced	0.344
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.056

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.259
SRR8400027	Control - Root	1.562