Gene detail

Gene detail information of Glyur000293s00015234

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01275.2	2.00E-69	RING/FYVE/PHD zinc finger superfamily protein
NR	XP_004496990.1	0	PREDICTED: uncharacterized protein LOC101496313 [Cicer arietinum]
Swissprot	tr\|F4JKK0\|SUD1_ARATH	8.00E-09	Probable E3 ubiquitin ligase SUD1
trEMBL	tr\|G7IAT6\|G7IAT6_MEDTR	5.00E-172	RING/FYVE/PHD zinc finger protein {ECO:0000313\|EMBL:AES62807.1}

Sequence

Transcript Sequence

>Glyur000293s00015234.1
AACTTATTGGGGGTGTACCCTTTTCAAATTGCTGTGTCTCAAATCAATTGCTTTTGTTCACTCAGTTCAATTTGTCAGTTTTGTTGATGTTTGCATCAGTTTGTGAGAAATTCTGAAGGAAATTTACTTGACCTAGAGGTTTTGGACACACGGAATACAGAAATTCCCTTGGGAGNAAGTACAGTGAATTGTGGTGTTTGGTGTGCAAATATGGGGGATCACTTTGATTTGCTGGTTGATCGATTGCTCACTGAGTCCACATTAGAAGCTGCACTCGAGAGCAGGAAGCGGTCAATGCAGGCTGCATCCTCAGCAGTGAATAATGCAGAAGTTGATCTCTCTTTGTTGAAGATGGGTCTGGATGATATCAAATATCCAGGGAAGCTGGTTGAATGCAGGATATGTCATGACGACGATGAAGATTCCAATATGGAGACACCCTGCTCTTGTTGTGGTAGTTTGAAGTATGCCCACCGCAGATGTATACAACGGTGGTGTAATGAGAAGGGTGACACCACATGTGAGATATGCCACCAGCAATTCAAGCCTGGTTATACAGCTCCTCCTCCACTATTTCAGTTTGGACGTATTCCAATGAGTTTCAGGGGAAATTGGGAGATTTCAAGAAGAGACTTAAATAGTACACATTTGGTTAGCATGGTTCCCACCGACCAGAACCTTATCAATTCTAACTATGACCAATATCCAGCCTCTTCTTCAGGAAGTTTGATATGCTGTCGTTCAGTTGCTCTCATTTTCATGGTTCTACTGATTTTAAGACATGCACTTCCCCTCGTAATTAATGGAAATAAGGAGTATTATTTCCCACTTTTCATGCTCTTATTATTTCGGACTGCTGGAATTGTTCTTCCTATATACTGCATGGTTAGAGCAGTGACGCTAATCCAGCGACATCGGAGACAACATAGAGATCATCCCAATGCCTTGGTCAGTTCATCTGACGATGAAATCGAGCAAGCAGCTTTGCAGCCTCAGCCTCATATCATACATCTACTGTAAAAATAAAAATACTATAGCCACTTGAAGTAAATGAAGTATGAAAAGCCTCTTGGTTTGAGATGCTGCAATTTGTCTTCTGATTTATGATGCAAATTAGATGGAGACAACTTCCTTGAGAGCCTTGATTTCGATGAGGAACGAGGATAAAACTGGTCACAAGACACTGAAATTCATATGTGCAACATGGCTCATAAGAGGCATTGCAGGCCACCTTATATTACCAAGTTCCTGTAATAGCTACTCCTCAGGCAAGTCTTGGCAGCAGCAAAAGTTATATTTGCATTACTGTTTCTGCTTACTGGTTGGAATTCTTCAAATTCCGAGCAATATCTTCTGTGTATAGATAGAATATTATAATTATATATAGAGAAAATTACATGGGTAGGTATCAAAGATGGGTGACTTATTGTATATATTGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00293	120637	124100	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000293s00015234.1	PF12906.2	RINGv	62	107	1.30E-12
Glyur000293s00015234.1	PF12428.3	DUF3675	113	230	7.10E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.191
SRR1783600	control	6.092
SRR1783602	moderate drought stress	4.122
SRR1811619	moderate drought stress	4.062

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.857
DRR006520	Root Summer glycyrrhizin high producing strain	8.318
DRR006521	Root Winter glycyrrhizin high producing strain	4.759
DRR006522	Root Winter glycyrrhizin high producing strain	4.472
DRR006523	Root Summer glycyrrhizin low producing strain	12.052
DRR006524	Root Summer glycyrrhizin low producing strain	12.211
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.741
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.689

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.352
SRR2868004	Drought Stress (root)	5.925
SRR2967015	Control (root)	5.859

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.867
SRR9715740	Leaf	2.122
SRR9715741	Leaf	2.668
SRR9715739	Root	1.848
SRR9715742	Root	3.115
SRR9715743	Root	3.087

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.528
SRR8749028	MeJA induced 9h	3.023
SRR8749029	MeJA induced 9h	2.541
SRR8749030	Uninduced	3.348
SRR8749031	Uninduced	2.107
SRR8749032	Uninduced	0.715

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.424
SRR8400027	Control - Root	9.807