Gene detail information of Glyur000293s00015228 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G03280.1 | 5.00E-30 | |
| NR | XP_003555937.1 | 1.39E-96 | PREDICTED: uncharacterized protein LOC100792170 [Glycine max] |
| trEMBL | tr|I1NFT2|I1NFT2_SOYBN | 5.00E-97 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G25990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00293 | 88902 | 89562 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000293s00015228.1 | PF14009.1 | DUF4228 | 1 | 169 | 2.20E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.376 |
| SRR1783600 | control | 0.790 |
| SRR1783602 | moderate drought stress | 0.401 |
| SRR1811619 | moderate drought stress | 0.401 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 392.245 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 389.740 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.564 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.256 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 629.598 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 627.449 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 114.405 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 113.360 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.897 |
| SRR2868004 | Drought Stress (root) | 51.592 |
| SRR2967015 | Control (root) | 266.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1692.520 |
| SRR9715740 | Leaf | 1420.163 |
| SRR9715741 | Leaf | 1705.821 |
| SRR9715739 | Root | 325.654 |
| SRR9715742 | Root | 875.410 |
| SRR9715743 | Root | 769.906 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 393.982 |
| SRR8749028 | MeJA induced 9h | 444.144 |
| SRR8749029 | MeJA induced 9h | 407.435 |
| SRR8749030 | Uninduced | 581.182 |
| SRR8749031 | Uninduced | 219.830 |
| SRR8749032 | Uninduced | 431.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 66.581 |
| SRR8400027 | Control - Root | 168.637 |