Gene detail

Gene detail information of Glyur000293s00015223

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15140.1	2.00E-113	FAD/NAD(P)-binding oxidoreductase
NR	XP_007142997.1	6.80E-177	hypothetical protein PHAVU_007G035000g [Phaseolus vulgaris]
COG	YP_629019.1	2.00E-33	NAD-binding oxidoreductase [Myxococcus xanthus DK 1622]
Swissprot	tr\|P43394\|K502_ACTDE	4.00E-104	Fruit protein pKIWI502
trEMBL	tr\|V7BEV2\|V7BEV2_PHAVU	3.00E-177	Uncharacterized protein {ECO:0000313\|EMBL:ESW14991.1}

Sequence

Transcript Sequence

>Glyur000293s00015223.1
GCTATATATCTGTATATTAAAATAGTTATTTTCGAAAAAAATTATATTTTGCTTTCTTGCCCTACTTTTGTGGCCGTGCCACTCCACTTTTCAGGCGTCATCTCATCTTCCACTCCAGCTCCATCGGACTACCTACAAGGCTTGACACGTGGAATCCTCATCAGCCTCAAATCAATAATACGCACCCAAGGNGCATTTTATCATAGGCCGCCCCTTCTGCCGCCACTTCCGACTCTCTTACCAAACTCATCGCGCCACACCCCAAAACGTGAACCGAACACAATAAAAAGACATGTCACTCCTATTATCCTCACCGCCACACTCCCTTACCCTCCACTCCCATGCGCACTTTAGCCCCTCCCCCTCTCCCATGTCCATCCTACGCCGCCTCAACCTAAAAAACCTCAGCAACCACCGCCGTCGCCGCATCGCCACCGTATCCGCCGCCGTACGCCAGGACACCACCGTCTGGACACCGGCCCCGCTCTCCGAGGTCGAGCCAGCCGCCGAATCGCTATTCCACGTGGCCATCGACGTGTCCGACGCGCCCGACCTGGTCGCGTCCCACACCCGCGCGGGGCAGTACCTACAGCTCCGAGTCCCCGACGCGCCGAAACCGTCGTTCCTGGCAATCGCGTCGCCACCGAAGCTCGCATCGGCGCGTGGTGTGTTCGAGTTTCTCGTGAAGAGCGTGGCGGGGTCCACCGCGGAAGCGTTGTGCGCGTTGANGAGAGGGGATGTGGTTGAGCTCAGCCAGGTTATGGGAAACGGGTTCGACATCACTCGGATCNACCCGCCCGAGAAATTTGGAACCGTTCTCGTCTTTGCCACTGGATCCGGAATTAGTCCAATCCGGTCACTTATTGAGTCGGGATTTGGTGCTAGCAAGAGGTCTGATGTGAGACTATATTATGGGGCAAGAAACCTTCAAAGAATGGCTTATCAGGATAGATTTAAAGACTGGGAATCTTCCGGTGTGAAGATTGTGCCTGTATTGTCTCAACCAGATGATAGTTGGAGTGGAGAAAGTGGCTATGTACAGGATGCATTGACAAGAGCGAAGCAAATATCTAACCCTTTGTCAACTGGTGCTGTACTTTGTGGGCAGAAACAGATGACTGAGGAAGTTACATCTATACTTGTTGCTGATGGGGTATCAGCTGAGAAGATATTAAAGAACTTCTGACCAAAATGGAATTTTGGCATTGTTGTATCATTTTTTGAATTATACTCGTAATTATTTGTTCATTGCCGTTGCTGAGGATCAAGCATCTCAGCATGGAATGTGAAAGGAAAAAAAAAACAATTTTGGAATTTAGTCCATATTAGAAACCACTTTCGCAGTTCAAATACAGGAAGGAATCCCAGGCTTATATTTATTTTTTGAAAAAACAAAACAAAATGTAGACAATACATTTCACGCTAGATGTGATCTTTTTATACTTACTTGGTGCAGTTCTTGTGGCCTTGTGTTTTCACACTGGATGTGATCTCTTTATACTTGTGTTTGGTTGTATATATAGACTAATGTAAATTTCTTTTAAAANAACCACAGCCTCTTCATTGCACATATACCTGTATCAAACTAGTTCATAAACCGAAAANTTCCTAAACCCCGTCAAGCCAGACACGAGTTCGCATGGGTTTCGTCTTGAAAGTGCTCTATCAAAGTTCCCTGCNTTGTTTCCCTCTGCGGCTTGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00293	57617	62326	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000293s00015223.1	PF00175.16	NAD_binding_1	179	279	5.10E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.224
SRR1783600	control	20.284
SRR1783602	moderate drought stress	14.010
SRR1811619	moderate drought stress	13.808

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.208
DRR006520	Root Summer glycyrrhizin high producing strain	11.185
DRR006521	Root Winter glycyrrhizin high producing strain	9.563
DRR006522	Root Winter glycyrrhizin high producing strain	9.479
DRR006523	Root Summer glycyrrhizin low producing strain	6.285
DRR006524	Root Summer glycyrrhizin low producing strain	6.600
DRR006525	Leaf Summer glycyrrhizin high producing strain	96.237
DRR006526	Leaf Summer glycyrrhizin high producing strain	96.202

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.348
SRR2868004	Drought Stress (root)	23.639
SRR2967015	Control (root)	21.243

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	60.755
SRR9715740	Leaf	37.289
SRR9715741	Leaf	51.036
SRR9715739	Root	6.440
SRR9715742	Root	13.260
SRR9715743	Root	11.866

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.474
SRR8749028	MeJA induced 9h	10.149
SRR8749029	MeJA induced 9h	8.552
SRR8749030	Uninduced	13.133
SRR8749031	Uninduced	8.421
SRR8749032	Uninduced	9.342

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.930
SRR8400027	Control - Root	26.992