Gene detail

Gene detail information of Glyur000293s00015221

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G52450.1	1.00E-147	MATE efflux family protein
NR	XP_004497005.1	0	PREDICTED: MATE efflux family protein 5-like isoform X1 [Cicer arietinum]
COG	YP_003716580.1	1.00E-21	MATE efflux family protein [Croceibacter atlanticus HTCC2559]
Swissprot	tr\|Q9SIA3\|MATE6_ARATH	2.00E-121	MATE efflux family protein 6
trEMBL	tr\|G7IAW6\|G7IAW6_MEDTR	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000293s00015221.1
TGTTATTATTATTGATTGATTGATGAAAAAGACGTAAACACATAAATATAGATAGATTTGGTGGTGTGGACTGTGGAATGTCTTGTCCTCTTGTTGCTGAGTGCTGATAATGGAAACAGCAGGCAAATCGAANCTTGAGACTCCACTGTGTCCAAACCAACATGGAAACCATGAACTCGATGCCCAGACATGTGACCAACGTTGTTGTTGCCGCAGAGAAGGTGTTGTTGAGGAAGCTAAAAAGCAACTATGGCTAGCAGGGCCTCTTATTGCAGTTAGTTTGCTGCAATACAGCTTACAAATGATATCTATTATGTTTGTTGGCCATCTTGGGAAACTGCCCCTTTCAGGTGCTTCCTTAGGCAACTCCTTCGCCTCAGTCACTGGTTATAGCGTTTTGTTAGGAATGGGGAGTNCATTGGAGACACTATGTGGCCAAGCCTATGGAGCAAAGCAATTTCACATGCTAGGAGTTCACACACAAAGGGCAATGCTTGTCCTTCTAGGGTTGAGCATTCCCTTATCTTTAATTTGGTATCACACAAGCAACCTTCTCATAGCATTAGGCCAAGACCATGACATATCAACCCAAGCTGGAATATTCAACCGGTGGATGATCCCTGGCCTTTTTGGTTATGGCATCCTTCAATGTCTCAACAGATTCCTACAGACCCAAAACAATGTTTTCCCAATGCTGATAAGCTCTGGAGTCACAACTTTGGTGCATATTGTCCTTTGTTGGGTTTTGGTCCTTCAATATGAATTAGGAAGCAAAGGAGCAGCATTGGCAATTAGCTTGTCCTATTGGGTTAATGTGTTCCTGTTGGTAATTTACATCAATTTGGCTACAGCTTGTGCATCAACTTGGAATGGGGTTTCCAAAGAGGCCTTGAATGATATTCTCAGCTTTTTAAAACTTGCCGTAGCTTCAGCAGTTATGATATGTTTGGAATATTGGTCCTTTGAGATGGTTGTTCTTCTCTCTGGCCTTTTGCCAGACCCGCAACTAGAGACATCTGTATTATCAATAAGCCTTAATACATGTTGGATGGTCTATATGATCTCAGTTGGTCTTGGCGGTGCCATAAGCACACGAGTATCAAATGAACTGGGTGGTGGGAACGCACAAGGTGCACTTTTGGCTCTCCGTGTGATGATTGTAATTGCCANAGTAGAGGGTACAACAGTAGGATTGGTTACCATTTTGGTAAGGAATGTTTGGGGAAGGCTATACAGCAATGAAGATGAAGTTATCAAATATGTTGCAAAGATGATGCCTCTGCTGGCACTGTCTGATTTCCTGGACGGTTTCCAGTGTGTGCTTTCAGGAGCTGCCAGAGGGTGTGGTTGGCAAAATCTATGTGCAGTTATAAACCTTGGTGCTTACTATGTTGTGGGAATTCCTTCTGCTATCCTATTTGCCTTTGTCTTCCACATTGGAGGGATGGGGCTTTGGATGGGAATCATATGTGGGCTTTCTGTTCAAGGGATAGCACTGGTTACAGTAAATGCATGCACGGATTGGGATAGAGAGGCTAGGAATGCAGTTGACGTGAATCAGAAAGCTAGAGTAATTACAGAACCGTTAGACTGAAAATGTCACACACAAACATCAGACAGCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00293	33538	36405	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000293s00015221.1	PF01554.13	MatE	52	212	4.50E-32
Glyur000293s00015221.1	PF01554.13	MatE	274	435	4.20E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.943
SRR1783600	control	2.078
SRR1783602	moderate drought stress	1.604
SRR1811619	moderate drought stress	1.476

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.598
DRR006522	Root Winter glycyrrhizin high producing strain	0.668
DRR006523	Root Summer glycyrrhizin low producing strain	3.159
DRR006524	Root Summer glycyrrhizin low producing strain	3.203
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.283
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.284

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.580
SRR2868004	Drought Stress (root)	26.377
SRR2967015	Control (root)	15.770

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.850
SRR9715740	Leaf	0.319
SRR9715741	Leaf	1.544
SRR9715739	Root	2.029
SRR9715742	Root	1.942
SRR9715743	Root	2.030

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.307
SRR8749028	MeJA induced 9h	8.925
SRR8749029	MeJA induced 9h	1.242
SRR8749030	Uninduced	30.508
SRR8749031	Uninduced	5.830
SRR8749032	Uninduced	6.731

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.810
SRR8400027	Control - Root	8.940