Gene detail

Gene detail information of Glyur000293s00015219

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15170.1	1.00E-126	MATE efflux family protein
NR	XP_007142994.1	0	hypothetical protein PHAVU_007G034700g [Phaseolus vulgaris]
COG	YP_003264696.1	1.00E-22	MATE efflux family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q8RWF5\|MATE9_ARATH	5.00E-114	MATE efflux family protein 9
trEMBL	tr\|V7BDJ6\|V7BDJ6_PHAVU	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000293s00015219.1
ATGGGGCAGCACAGAAATAACATGGCCATGGAGGAGAGCCTCTTAGCGAAACAGATTGCAGCAGAGCTGGCGCAGCAGAGAGTGATCACTTGGGATGCTTTCGTTCAAGAAATCAAAAGGGTTTGTTACATAGCAGGGCCTATGGTGGTTGTGACTTCTTCCCAATACTTGTTGCAGCTGGGAATGGCTAGTGGACTTGAAACTATTGGTGGGCAGGCTTATGGAGCTCAGCAATATCAAAGAATTGGAATGCAAACATACACTGCCATGTTCTCTCTCCTATTGGTTTGTCTCCCCCTATCCATCATTTGGATCAACATGGAAAACATACTAGTCTTCATAGGCCAGGACCCTCTAATTTCACATGAAGCTGGGAGATTCATACTTTGGCTTCTTCCAGCACTTTTTGCATATGCAATTCTGCAGCCATTAGTTCGATACTTCCAAATTCAAAGTGTGCTCCTTCCCATGCTTTTAAGTTCTTGTGCCACTCTTGCTATCCATATACCTCTTTGTTGGGCTTTGGTATTCAAGACAGGACTGAACAATGTTGGTGGAGCATTAGCAATCAGCATTTCAATCTGGGCAAATGTGATTTTCCTTGGATTATACATGAGATACTCTTCTTTATGTGCAAAGACCAGGGCTCCAATTTCAATGGAGCTGTTCAAAAGAATTTGGGAGTTCTTTCGTTTTGCTATCCCTTCTGCAGTAATGATTTGTCACAATACCATTTCAACTCTATATGCAATACCCTTTGGAATTGGTGCTGGAGCAAGCACAAGGGTTTCAAATGAATTAGGAGCTGGGAATCCACGTGGTGCCCATGTTGCTGTGTTGGCTGGAATGTCTCTTGCAGTCATGGAAACAAGTGTAGTAAGCTTAACCCTCTTTGCCTGCCGCCATGTTTATGGTTATTTTTACAGTAATGAGAAGGAAGTTGTGGATTATGTCACTGTCATGGCTCCTCTGGTTTGTATATCTGTTATACTAGACAGCATACAAGGCGTTCTCGCAGGGGTTGCTAGAGGTTGTGGATGGCAACACATTGGGGTTTATATCAATATAGCAGCCTTCTACCTCTGTGGGATTCCAGTTGCCGCCTTATTAGGATTTTGGGTACAGCTGAAAGGAAAAGGACTTTGGATTGGTATACAAGTTGGTTCTTTTGTTCAATGTGTTCTGCTTTCTATCGTAACAAGTTGCATAAACTGGGAACAACAGGCAATAAAGGCTAGAAAGAGGTTATCTGAAGGTCAATTTTCAGCAGACAATAGACTGGAATCTGTTGAGACATTGAAGGATGCCATAACCAAAAAGGCCAGGGATCATCCACCGGAAGCGAAAGGCAGGAGAAGGATCAAAAGTGTGTCATATCATATCAGACCGACTCTGTATCGGTCTTCGTCTTCTGGATTGGAAGGAAGGAGAGAGGAGAGAGAAGAGAGAAGCAAATTAAGGATGGAAGAGAGTCTCTTAGCAAAAGAGAATATTGATGGTGAGGAGGAGCAGCCACAGAAGGGGGTGACTTGGAATGCTTTCACTCAAGAANTCAAAAGGATTTGTCACATAGCAGGGCCTATGGTGGTTGTGACTTCTTCCCAATACTTGTTGCAGGTCGTGTCCACCATGATAGTCGGTCACCTGGGTGAGCTCTACCTCTCTAGCTCCGCCTTAGCCATCTCCTTCACCGGTGTCACCGGTTTCAGCTTCCTTATGGGAATGGCTAGTGGACTGGAAACCATTTGTGGGCAGGCTTTTGGAGCTCAGCAATATCAAAGAATTGGAATGCAAACATACACTGCCATATTCTCTCTCATATTGGACCCTCTAATTTCACATGAAGCAGGGAGATTCACCATTTGGCTTGTCCCTGCACTCTTTGCTTATGCAATTCTGCAGCCTTTAGTTCGGTATTTCCAAATGCAAAGTTTGCTTCTTCCCATGCTTTTGAGCTCTTGTGTCACTCTTGGTATCCATATACCTCTTTGTTGGGCTTTGGTGTTCAAGACAGGGCTGAACAATGTTGGTGGGGCAATAGCAATGAGCATTTCAATCTGGGCAAATGTGATTTTTCTTGGATTATACATGAGATACTCTTCTTCATGTGCAAAAACCAGGGCTCCAATTTCAATGGAGCTGTTCAAAGGAATTGGGGATCTCAATACCATTGCAACTCTCTATACAATACCTATGGGAATTGGTTCTGCAGCAAGCACAAGGGTGTCAAATGAGTTGGGAGCTGGGAATCCATATGCTGCACGTGTGGCTGTGTTGGGTGCCATGTCACTTGCAATCATGGAGACAGGTGTAGTAAGCGCAACCCTCTTTGCCTGCCGCCATATCTATGGCTATGTTTTCAGCAGTGATAAGGAAGTTGTTGATTATGTCACTGTCATGGCTCCTCTGGTTTGTATATCTGTTATACTGGACAGCATACAAGGTGTTCTCGCAGGGATTGCTAGAGGTTGTGGATGGCAACACATTGGGGTTTATGTAAATCTAGGGGCCTTCTACCTCTGTGGGATTCCAGTTGCTGCCTCATTGGCTTTTTGGGCAAACAAAGCTAGACAGAGGTTATTTGATGTTCAATTTTCAGCAGACAATAGACTGGGTCTATTGGAGAAAGAGGGAGAGGGTCGTTCAGGTTCAGGCATAATAACAACATGGGGTGTCTTTGCTCAGGAGGTGAAAAGGGTTGGTTATCTAGCGGCTCCTATGATCACCGTCACTCTCTCACAGTATTTTCTACAAATCATCTCATTGATGATGGTGGGTCACTTGGGCAAGCTTGCTCTCTCTAGCACTGCCATTGCCATCTCCCTCTGTGCTGTCTCTGGCTTCAGTCTTCTTTTTGGAATGTCATGTGCACTGGAAACTCAATGCGGTCAAGCGTATGGAGCACAGCAATATCAAAAATTTGGTGTTCAAATTTACACTGCTATTGTATCTCTTGTTTTAGCTTGTCTCCCTCTCTCTCTTTTGTGGATCTGCTTGGGGAAGCTACTCGCTTTACTTGGCCAAGACCCTTTGATTTCACAAGAAGCTGGAAGATTTGCCCTTTGCATGATCCCTTCTCTCTTTGCTTATGCAACACTTCAGGCCCTTGTCCGCTATTTTCTGATGCAAAGGGCAGCATTTTCTATTGGGACTTCATACTGGTTGAATGTGATTTTGCTTGCATTGTATATGAGATTCTCTGCTGATTGTGAAAAGACTCGGGTTCCAATTTCAATGGAGCTTTTATCAATCACCACAACAATCTATACAATACCGGAAGCAATTGGCTCAGCAGCAAGCGCTAGAGTTTCAAATGCATTAGGAGCTGGAAATCCACAAGCAGCACGAGTGTCTGTTTCTGCTGCTATGGCTCTTGCAGCTTCCGAGGCTGTTTTGGTGAGTTCCATCATTTTTGCCTGTCGGAAGGTTTTAGGTTATGTATTTAGCAATGAGCAGGACGTGGTGGATTATGTCACAGATATGGTTCCTCTGTTAAGTCTATCTGTTATACTGGATACCTTACATGGTACCCTTTCAGGTATTGCCAGAGGATGTGGATGGCAGCATTTGGGAGCATATGTGAACCTTGGAGCCTATTATGTTGTGGGAATTCCAATTGCAGCTATATTGGGCTTCTGGGTAGAGTTGGGAGGAAAAGGCCTGTGGATTGGGATACTGATTGGTGCCTTCTGCCAAACAGTTATGCTATCCCTCATAACAAGTTGTACTAACTGGGAAAAACAGGCAATTGAGGCACGGGAAAGGATATTTGAAGGAAATTCCTTTCGGCTGTCAGCTTGTTTAGTTAACATTGGTAATTGGTTGCAGAAAAGATCAAATTTCAGATACAATAATAAGGAGGAAAAAGTTTTCTATCAAGTGCTATAA

Protein Sequence

>Glyur000293s00015219.1
MGQHRNNMAMEESLLAKQIAAELAQQRVITWDAFVQEIKRVCYIAGPMVVVTSSQYLLQLGMASGLETIGGQAYGAQQYQRIGMQTYTAMFSLLLVCLPLSIIWINMENILVFIGQDPLISHEAGRFILWLLPALFAYAILQPLVRYFQIQSVLLPMLLSSCATLAIHIPLCWALVFKTGLNNVGGALAISISIWANVIFLGLYMRYSSLCAKTRAPISMELFKRIWEFFRFAIPSAVMICHNTISTLYAIPFGIGAGASTRVSNELGAGNPRGAHVAVLAGMSLAVMETSVVSLTLFACRHVYGYFYSNEKEVVDYVTVMAPLVCISVILDSIQGVLAGVARGCGWQHIGVYINIAAFYLCGIPVAALLGFWVQLKGKGLWIGIQVGSFVQCVLLSIVTSCINWEQQAIKARKRLSEGQFSADNRLESVETLKDAITKKARDHPPEAKGRRRIKSVSYHIRPTLYRSSSSGLEGRREEREERSKLRMEESLLAKENIDGEEEQPQKGVTWNAFTQEXKRICHIAGPMVVVTSSQYLLQVVSTMIVGHLGELYLSSSALAISFTGVTGFSFLMGMASGLETICGQAFGAQQYQRIGMQTYTAIFSLILDPLISHEAGRFTIWLVPALFAYAILQPLVRYFQMQSLLLPMLLSSCVTLGIHIPLCWALVFKTGLNNVGGAIAMSISIWANVIFLGLYMRYSSSCAKTRAPISMELFKGIGDLNTIATLYTIPMGIGSAASTRVSNELGAGNPYAARVAVLGAMSLAIMETGVVSATLFACRHIYGYVFSSDKEVVDYVTVMAPLVCISVILDSIQGVLAGIARGCGWQHIGVYVNLGAFYLCGIPVAASLAFWANKARQRLFDVQFSADNRLGLLEKEGEGRSGSGIITTWGVFAQEVKRVGYLAAPMITVTLSQYFLQIISLMMVGHLGKLALSSTAIAISLCAVSGFSLLFGMSCALETQCGQAYGAQQYQKFGVQIYTAIVSLVLACLPLSLLWICLGKLLALLGQDPLISQEAGRFALCMIPSLFAYATLQALVRYFLMQRAAFSIGTSYWLNVILLALYMRFSADCEKTRVPISMELLSITTTIYTIPEAIGSAASARVSNALGAGNPQAARVSVSAAMALAASEAVLVSSIIFACRKVLGYVFSNEQDVVDYVTDMVPLLSLSVILDTLHGTLSGIARGCGWQHLGAYVNLGAYYVVGIPIAAILGFWVELGGKGLWIGILIGAFCQTVMLSLITSCTNWEKQAIEARERIFEGNSFRLSACLVNIGNWLQKRSNFRYNNKEEKVFYQVL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00293	19212	42384	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000293s00015219.1	PF01554.13	MatE	55	173	2.60E-16
Glyur000293s00015219.1	PF01554.13	MatE	225	368	1.90E-29
Glyur000293s00015219.1	PF01554.13	MatE	527	607	3.70E-12
Glyur000293s00015219.1	PF01554.13	MatE	722	846	9.80E-26
Glyur000293s00015219.1	PF01554.13	MatE	906	1037	7.60E-19
Glyur000293s00015219.1	PF01554.13	MatE	1080	1208	7.40E-27
Glyur000293s00015219.2	PF01554.13	MatE	55	173	2.30E-16
Glyur000293s00015219.2	PF01554.13	MatE	226	368	1.60E-29
Glyur000293s00015219.2	PF01554.13	MatE	527	607	3.30E-12
Glyur000293s00015219.2	PF01554.13	MatE	722	846	8.60E-26
Glyur000293s00015219.2	PF01554.13	MatE	906	1036	1.60E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.803
SRR1783600	control	3.938
SRR1783602	moderate drought stress	5.783
SRR1811619	moderate drought stress	5.770

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.168
DRR006520	Root Summer glycyrrhizin high producing strain	6.163
DRR006521	Root Winter glycyrrhizin high producing strain	34.752
DRR006522	Root Winter glycyrrhizin high producing strain	34.851
DRR006523	Root Summer glycyrrhizin low producing strain	7.325
DRR006524	Root Summer glycyrrhizin low producing strain	7.038
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.070
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.104

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.782
SRR2868004	Drought Stress (root)	13.702
SRR2967015	Control (root)	10.866

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.229
SRR9715740	Leaf	12.872
SRR9715741	Leaf	19.674
SRR9715739	Root	3.637
SRR9715742	Root	4.971
SRR9715743	Root	4.935

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.343
SRR8749028	MeJA induced 9h	28.577
SRR8749029	MeJA induced 9h	18.830
SRR8749030	Uninduced	45.772
SRR8749031	Uninduced	10.451
SRR8749032	Uninduced	27.808

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.081
SRR8400027	Control - Root	7.330