Gene detail

Gene detail information of Glyur000293s00015216

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01110.1	5.00E-121	Sec-independent periplasmic protein translocase
NR	XP_004497010.1	0	PREDICTED: sec-independent protein translocase protein TATC, chloroplastic-like [Cicer arietinum]
COG	YP_007079614.1	3.00E-106	twin arginine targeting protein translocase subunit TatC [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q94G17\|TATC_PEA	0	Sec-independent protein translocase protein TATC, chloroplastic (Precursor)
trEMBL	tr\|V7BAS1\|V7BAS1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW14982.1}

Sequence

Transcript Sequence

>Glyur000293s00015216.1
GTTATCCAAACAAGGGCATGAATATCAGGCCGCGAGGCCACCCACATAACACAACAGGCGCAAACCAAATCGTATCTTGTAACAAGAACCAACCGTTTGACGGTCAAAAAGAAATTTGACGGCGGAGCGAAGCGTGGAGGAGGTATGGGGTTGGTAACAACCACTACTGTTCCTATGAATATCGTTCCCAAATTCGGGTTGCTCCGAAACCACCTCGCCTCCGTTCGGNTCAACAACTCCTCCTCCTCCGGGTTCAGCACCTTCCCTCTCTCTCGGTCTCGAAGGAGGAATAGTAGTTTAAGTAGAAGATTTGTTTGCTTCGCTGTTGATGACGACCTCAGACAGAAGCAGCAACAGCTGAACACTAGTTCAACTGGGCTTGGCTCCGCCATTGAAGATAGGCCTGAAACACTGGAAAATTTTACGCAAGATGGGGAAAGGGGTGCTATCTATGATTTTCTTTATCCCAGTAAAGAGCTTCTTCCTGATGATAAAGAAATGAGCATATTTGATCANCTTGAAGAGCTGCGACAGAGAATCTTTGTATCAGTTCTAGCAGTAGGAGCTAGCATTTTGGGATGCTTTGCGTTTTCAAAAGATTTGATAATGATTCTCGAAGCTCCTGTTAAATCAGAGGGTGTNAGGTTTCTTCAGCTAGCTCCTGGCGAATTTTTCTTCACGACTTTAAAGGTGTCTGGATATTGTGGCCTCCTGTTAGGAAGTCCTATCATCCTCTATGAAATCATCGCCTTTGTACTTCCAGGTCTAACGAAATCTGAAAGAAGGTTTCTAGGGCCAATTGTTTTAGGCTCATCAGTTCTTTTCTACGCCGGAATAACCTTCTCCTACTTAGTTCTGGTACCTGCAGCATTAAATTTCTTTGTCAATTACGCTGAAGGTGCTGTTGAATCATTGTGGTCCATTGATCAATACTTTGAGTTCGTTCTGGTTCTTATGTTCAGCACAGGCTTGTCTTTCCAGGTACCTGTTATACAATTTCTATTGGGACAAGTTGGATTGGTGACTGGTGATCAGATGCTATCAGTTTGGAGGTATGTTGTGGTTGGTGCAGTAGTGGCAGCTGCTGTAGTTACTCCTTCCACAGATCCTCTCACTCAAGTTCTTCTAGCGGCACCCTTATTGGGTCTTTACTTTGGTGGCGCATGGATGGTCAAGCTTGCTGGACGGTGAACTTTGCCCCATATATCTTAATCTGCTAGAAGTTTTTCAGTCTGAACAGATGTTAAATGTAAATTCACACAGGAATCTAGTGTATATTGAGCATTACTCTTCCTATATTCTGATTGATTTAAACTTATAATTCTGTAACTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00293	10996	13998	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000293s00015216.1	PF00902.13	TatC	123	331	2.30E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.079
SRR1783600	control	17.036
SRR1783602	moderate drought stress	20.645
SRR1811619	moderate drought stress	20.660

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.394
DRR006520	Root Summer glycyrrhizin high producing strain	25.780
DRR006521	Root Winter glycyrrhizin high producing strain	56.743
DRR006522	Root Winter glycyrrhizin high producing strain	55.097
DRR006523	Root Summer glycyrrhizin low producing strain	34.394
DRR006524	Root Summer glycyrrhizin low producing strain	33.863
DRR006525	Leaf Summer glycyrrhizin high producing strain	86.512
DRR006526	Leaf Summer glycyrrhizin high producing strain	86.142

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.127
SRR2868004	Drought Stress (root)	25.091
SRR2967015	Control (root)	30.879

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	90.170
SRR9715740	Leaf	131.012
SRR9715741	Leaf	96.512
SRR9715739	Root	32.088
SRR9715742	Root	25.250
SRR9715743	Root	26.426

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.784
SRR8749028	MeJA induced 9h	11.996
SRR8749029	MeJA induced 9h	9.763
SRR8749030	Uninduced	14.550
SRR8749031	Uninduced	14.236
SRR8749032	Uninduced	15.572

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.239
SRR8400027	Control - Root	32.573