Gene detail

Gene detail information of Glyur000293s00015215

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01120.1	4.00E-130	origin recognition complex subunit 4
NR	XP_004497011.1	0	PREDICTED: origin recognition complex subunit 4-like [Cicer arietinum]
Swissprot	tr\|Q6EWX1\|ORC4_ARATH	6.00E-165	Origin of replication complex subunit 4 {ECO:0000303\|PubMed:16179646}
trEMBL	tr\|V7BEU0\|V7BEU0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW14981.1}

Sequence

Transcript Sequence

>Glyur000293s00015215.1
ATGGAAATGGAGGGAGAGAATCACAAAGAGAAGGCGTTGAACCTGCTTCGAAGCAGAATCTGCGACCCCAAATTCATCTTCAGCGATTCTCCAGATGGCAACTACAGCAAGCTCAAATTCATGGTGTCAAGTTCGGTGACGGAGGCGTGCAACAACTCTATTCTGCTCCTCGGTCCCCGTGGCTCCGGGAAGATTGCGGTTTTGGAGCTTGTCATTCAAGATTTGTTGCTTCAATACCCAGACTCAATTTCAGTGGTCAGGCTGAGTGGGCTTTTACATAGTGATGACATCTCTGCATTCAAGGAAATAGCCAGGCAGTTATGCATGGAGCATCAATTGCTATTCTCAAAATCGGCATCATTTGATGACAATTCCCAATTTATGGTAGCCGTGCTAAAAGAATGCGGATTAGCACATAAAACAGTAATTTTTATTTTGGATGAGTTTGACCTCTTTGCTCAGGGTAAACAGCGGTTACTTTATAGCTTGCTAGATGCAATGCAATCAGTAACATCACAGGCTGTTGTACTTGGCATTAGTTGCCGGCTGGATGCAGATCAGCTATTGGAGAAAAGAGTACGATCTCGTTTTTCACATAGAAAGCTGTTGTTCTTACCACCTTCAATAGAAGATTCACAAAGATTATTGGTGCACGTGCTGACATTACCAATAGATTCAAGCTTTCCACATGATTATGCTGTTGAATTTAATAGAAAGGTCCAAACTGGGTTTCTGTCCCAGGAAAACTTTGAAACTGCATTTTCAAGTATCCAGAGACAGCCCAAACTGGAATGTTTAAGAAAGTACAAAAGTATACATGATTCTTTCCAGACTTCTGATTATTATGCACGAAATGTCTGTTTAAGGGCATTTGAGCACCTTATACATCGTGAATTAATATGTTTCACAGACAATAGAGGACATAGTTTGTCTGTTGAATTTCGTCCTGTAAAGCTTTTAATTTCATCTGCTGAACTGCATCAGGGACTAAGAGCATATCGTTCATGCCCTGCTATCCTTCAAAAGTTAATGGATCGTGAAGGCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00293	5895	9657	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000293s00015215.1	PF13191.1	AAA_16	37	169	2.30E-08
Glyur000293s00015215.1	PF14629.1	ORC4_C	265	331	1.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.747
SRR1783600	control	0.818
SRR1783602	moderate drought stress	0.559
SRR1811619	moderate drought stress	0.586

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.400
DRR006520	Root Summer glycyrrhizin high producing strain	0.370
DRR006521	Root Winter glycyrrhizin high producing strain	0.564
DRR006522	Root Winter glycyrrhizin high producing strain	0.510
DRR006523	Root Summer glycyrrhizin low producing strain	0.421
DRR006524	Root Summer glycyrrhizin low producing strain	0.404
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.088
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.087

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.275
SRR2868004	Drought Stress (root)	2.855
SRR2967015	Control (root)	2.142

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.358
SRR9715740	Leaf	0.056
SRR9715741	Leaf	0.277
SRR9715739	Root	0.254
SRR9715742	Root	0.688
SRR9715743	Root	0.338

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.035
SRR8749028	MeJA induced 9h	2.630
SRR8749029	MeJA induced 9h	0.908
SRR8749030	Uninduced	0.406
SRR8749031	Uninduced	0.376
SRR8749032	Uninduced	0.172

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.299
SRR8400027	Control - Root	3.196