Gene detail

Gene detail information of Glyur000293s00015213.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08510.1	2.00E-79	fatty acyl-ACP thioesterases B
NR	XP_003555265.2	0	PREDICTED: palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Glycine max]
COG	YP_006720699.1	1.00E-24	acyl-CoA thioesterase [Geobacter metallireducens GS-15]
Swissprot	tr\|Q9SQI3\|FATB_GOSHI	4.00E-95	Palmitoyl-acyl carrier protein thioesterase, chloroplastic (Precursor)
trEMBL	tr\|K7N323\|K7N323_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G25833.1}

Sequence

Transcript Sequence

>Glyur000293s00015213.1
ATGGCTGCTGCTACTACTACTTTCTCATGTCAAGCCTCTTCCTTTCTTGTAAGGTGCTGTTCCATGAAAGAAAACCATGACAACCAGAAAAATAGCAGCATCAGAATCAATGGGACTTTTAGGTCCCCAGCTACTAAAGTTGAGTCACTTGGCCTAACAGCTGAAGCTGCTTCAGCAGCAGCTACCACTCTTGGTAAGGCTGTTGAAAATGGCCAACGCCAAAACATCCCAACAAAGAAGCAATTGGTTGATCCTCATCGTCAAGGGCTCATTGTTGAAGGTGGAGTTGGTTATAGACAGACTGTTGTTATCAGGTCCTATGAAGTTGGCCCTGATAAAACTGCAACACTTGAGAGCATCCTCAATCTTCTTCAGGAAACAGCATTAAACCATGTATGGATGTCTGGATTGCTCAGTGATGGGTTTGGGGCAACACATGGAATGATGAGGAATGATCTCATTTGGGTTGTCTCAAGAATGCAAGTTCTGATTGATTACTATCCCATCTGGGGAGAGGTACTTGAAATTGATACATGGGTTGGAGCATCGGGTAAGAATGGAATGCGGCGGGACTGGCTGATAAGAAGTCAAGCCACAGGCCACATTTTTGCTCGTGCAACAAGCACATGGGTGATGATGAACCGCAAAACAAGACGCCTCTCCAAAATGCCAGAAGAGGTGAGGAATGAACTTGCACCTTGGTTCATAGAGAAGCAAGCAATAAAAGAAGATGCTCCCGAAAAAATTGTCAAATTGGACAAAGAGGCAAAATACATGAATTCCAATTTAAAGCCCAAGAGAAGTGATTTGGACATGAACCAACATGTAAATAATGTGAAGTATGTAAGATGGATGCTGGAGACCATCCCAGATCAAATTCTAGAGGGCCACCAATTATCTGGTATCATATTGGAGTACAGAAGGGAGTGTGGAAGCTCAGATATAGTTCAATCACTATGTGAACCTGAAGAGGATGAAATACTCCATGGTGTAATGGAACCAGATTACTGCACAACTTTGCTCAATGGGTTGTCCTTGGCATCATCATCAGATATTATAAATGGTGGTGGGGTGCTGACATGTCTTGAGCAGAGGCCAATAAGGTACACACACCTTCTACAAACCAAGGGAGAAAAACAAAATGAAGAAATTGTGAGGGGAAAGACCACGTGGAAGAGGAAGCTTGCTACACTACCATTTTCCACCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00293	819	2967	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10781	FATB	EC:3.1.2.14 3.1.2.21	Fatty acid metabolism	map01212
			Fatty acid biosynthesis	map00061

Gene Ontology

biological_process
GO:0006633 fatty acid biosynthetic process

molecular_function
GO:0016790 thiolester hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000293s00015213.1	PF01643.12	Acyl-ACP_TE	96	392	1.10E-87

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.375
DRR006520	Root Summer glycyrrhizin high producing strain	0.298
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.090
DRR006524	Root Summer glycyrrhizin low producing strain	0.089
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.377
SRR2868004	Drought Stress (root)	0.004
SRR2967015	Control (root)	0.220

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.048
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.098
SRR8749028	MeJA induced 9h	0.310
SRR8749029	MeJA induced 9h	0.137
SRR8749030	Uninduced	0.104
SRR8749031	Uninduced	0.350
SRR8749032	Uninduced	0.207

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.042
SRR8400027	Control - Root	0.028