Gene detail information of Glyur000292s00034054 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G14320.1 | 2.00E-60 | Ribosomal protein S13/S18 family |
| NR | XP_003601110.1 | 8.08E-94 | 30S ribosomal protein S13 [Medicago truncatula] |
| COG | YP_007996562.1 | 5.00E-37 | 30S ribosomal protein S13 [Strawberry lethal yellows phytoplasma (CPA) str. NZSb11] |
| Swissprot | tr|P42732|RR13_ARATH | 5.00E-76 | 30S ribosomal protein S13, chloroplastic (Precursor) |
| trEMBL | tr|G7J3M7|G7J3M7_MEDTR | 3.00E-94 | Uncharacterized protein {ECO:0000313|EMBL:AFK46233.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00292 | 104422 | 106703 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000292s00034054.1 | PF00416.17 | Ribosomal_S13 | 86 | 190 | 1.30E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.466 |
| SRR1783600 | control | 16.582 |
| SRR1783602 | moderate drought stress | 8.854 |
| SRR1811619 | moderate drought stress | 8.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.813 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.894 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.801 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.562 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.249 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.456 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 136.084 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 136.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 31.618 |
| SRR2868004 | Drought Stress (root) | 30.747 |
| SRR2967015 | Control (root) | 28.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 89.800 |
| SRR9715740 | Leaf | 112.512 |
| SRR9715741 | Leaf | 73.433 |
| SRR9715739 | Root | 4.262 |
| SRR9715742 | Root | 7.445 |
| SRR9715743 | Root | 4.700 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 80.359 |
| SRR8749028 | MeJA induced 9h | 58.332 |
| SRR8749029 | MeJA induced 9h | 75.339 |
| SRR8749030 | Uninduced | 32.807 |
| SRR8749031 | Uninduced | 23.774 |
| SRR8749032 | Uninduced | 29.760 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 31.951 |
| SRR8400027 | Control - Root | 32.117 |