Gene detail information of Glyur000291s00016231


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G21215.16.00E-73RNA-binding (RRM/RBD/RNP motifs) family protein
NRXP_003531769.12.18E-149PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform X1 [Glycine max]
trEMBLtr|K7L852|K7L852_SOYBN3.00E-166Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G23853.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00291163816167721-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000291s00016231.1PF00076.17RRM_139970.00011
Glyur000291s00016231.1PF00076.17RRM_11882496.60E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control84.301
SRR1783600control84.878
SRR1783602moderate drought stress142.657
SRR1811619moderate drought stress140.271

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain69.067
DRR006520Root Summer glycyrrhizin high producing strain66.743
DRR006521Root Winter glycyrrhizin high producing strain27.302
DRR006522Root Winter glycyrrhizin high producing strain27.886
DRR006523Root Summer glycyrrhizin low producing strain119.651
DRR006524Root Summer glycyrrhizin low producing strain120.090
DRR006525Leaf Summer glycyrrhizin high producing strain25.410
DRR006526Leaf Summer glycyrrhizin high producing strain25.458

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)61.451
SRR2868004Drought Stress (root)55.277
SRR2967015Control (root)66.078

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf36.450
SRR9715740Leaf36.105
SRR9715741Leaf48.377
SRR9715739Root99.043
SRR9715742Root69.107
SRR9715743Root69.857

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h57.371
SRR8749028MeJA induced 9h68.874
SRR8749029MeJA induced 9h38.311
SRR8749030Uninduced25.649
SRR8749031Uninduced12.111
SRR8749032Uninduced26.421

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root94.279
SRR8400027Control - Root81.055

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved