Gene detail information of Glyur000291s00016227 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G31590.1 | 0 | Cellulose-synthase-like C5 |
| NR | XP_006582990.1 | 0 | PREDICTED: probable xyloglucan glycosyltransferase 5-like [Glycine max] |
| COG | YP_002602659.1 | 4.00E-54 | putative glucosyltransferase family protein [Desulfobacterium autotrophicum HRM2] |
| Swissprot | tr|Q9SB75|CSLC5_ARATH | 0 | Probable xyloglucan glycosyltransferase 5 |
| trEMBL | tr|I1KG54|I1KG54_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G00590.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00291 | 140133 | 143984 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000291s00016227.1 | PF13632.1 | Glyco_trans_2_3 | 326 | 494 | 1.60E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.292 |
| SRR1783600 | control | 17.515 |
| SRR1783602 | moderate drought stress | 14.657 |
| SRR1811619 | moderate drought stress | 14.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.962 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.705 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.199 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.242 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.580 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.980 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.351 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.815 |
| SRR2868004 | Drought Stress (root) | 14.422 |
| SRR2967015 | Control (root) | 16.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.232 |
| SRR9715740 | Leaf | 1.957 |
| SRR9715741 | Leaf | 2.558 |
| SRR9715739 | Root | 9.963 |
| SRR9715742 | Root | 34.096 |
| SRR9715743 | Root | 27.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.548 |
| SRR8749028 | MeJA induced 9h | 2.783 |
| SRR8749029 | MeJA induced 9h | 2.037 |
| SRR8749030 | Uninduced | 0.204 |
| SRR8749031 | Uninduced | 0.026 |
| SRR8749032 | Uninduced | 0.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.828 |
| SRR8400027 | Control - Root | 34.760 |