Gene detail

Gene detail information of Glyur000291s00016225

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G21200.1	5.00E-88	proton gradient regulation 7
NR	XP_004507537.1	4.44E-159	PREDICTED: uncharacterized protein LOC101507537 [Cicer arietinum]
Swissprot	tr\|Q9LU39\|GLUBP_ARATH	2.00E-108	Glutamyl-tRNA reductase-binding protein, chloroplastic {ECO:0000303\|PubMed:22180625} (Precursor)
trEMBL	tr\|G7JVM7\|G7JVM7_MEDTR	1.00E-158	Glutamyl-tRNA reductase-binding protein {ECO:0000313\|EMBL:AES86364.1}

Sequence

Transcript Sequence

>Glyur000291s00016225.1
GTTTAACATAACATTTCAATTCGAGTCGTTTCATTTCAATTTCAATTTCAATTTCAATTCCATCGTCTTCTTCTCTGTGATCCGAATTCTGAACTGAAAAAGTGAAGACACAAATGCTTCTTCAAACGAGGAACTTACACTTTGGTGCGCCATGGGTGACACTAACGCCCACACCAAAAACAAGTAGTAGCTANAACACTCGTAAAAATAAAATGTCGTCGTGGTTCCCTTCAAATTCANTCATCTCATGCAGCTCGACCCAATTGGAAATGAAGAAGAGCGAGAACAAGATCGTGAAACCGTTACCCGCTGAGGTATCAAGGACCATAATGGAGTTAGCGAGTGTGGGCACGCTTTCCACGCTCACCCAACAGGGTTGGCCTCTCGGCATTGGTGTCCGATTCGCTGTTGACCCCGATGAAGGAACCCCCTTCTTCTCCTCCTTCAATCACATTCCCACCAACAACATCCCCTCTTCCCTTCATGTTCAGTTTATACAGTCTGGANTGCGCACCCCTCAGTGTACACTTCAAGGAACCCTCACCAAACCACAGGATCCAATCGCAATCAAGCGGCTTGTTTCTTTGTGGAGGAAGAGGTTTGCAGAAGAAGTTGATCAAGATTTTGTGTATATTATTGATGTGGATCGGGATGGTGTGTGGTTCACCTCTTTGGACTACAAAAATGCTCAACCCGACCCCCTTCGAGAGTTTGCTGACAAGTTGGTCGCTGAAATCAACACCAACAATATGGAAGACATTACTCGCTTTTGCAATGTCTATGTTGATTTGGATTTCCAGGTCTCAGAAGCAAAGCTGATATGGGTGGATCGCTTGGGCTTTGATATGCGTTTGTTTTCCCCTCACAGAGGTGTATTTGAGGTCCGCATTCCGTTCCCTAGAGAAGTCACTGATGAAAAAGGTGCCAAGTCAACATTTAATTGTATGTCACAACTGGCTTGGGAGGTTGAGAGAAACTTTCATCCTCCAGATTTTGAGAAGGTTACACAATTGAAACACGTNAAGTCCTGATGCTTCAGTTATATTTTTGTCTGTGCAACCACTTAACTGGTTCTTCAATCGCCATCAAATTATCCTTGGTGAAGCTTTGTAATTTTTCAAGAATATGATGACAATGTCTATTGTGTTTGTATTCCGTGATGATTCGTTTGGGGCTTGATGTTGAGATCATNGCAGAGACTAAGCTCGGTTAAGTTTTGCACGGTAATTCCTTTTTTTTTTATAGGAGGAGGAGAGATTCGAACTCGAGTTTGCACNGTAATTCTATTGCAGGCCTTTTGCGTATTGAACTTTCTTTGACACAAATGAGCTGGTGACGACAGTATATTGTACTGCCTTTCCTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00291	124750	127366	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0010181 FMN binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.731
SRR1783600	control	30.731
SRR1783602	moderate drought stress	13.928
SRR1811619	moderate drought stress	13.666

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.487
DRR006520	Root Summer glycyrrhizin high producing strain	19.151
DRR006521	Root Winter glycyrrhizin high producing strain	2.853
DRR006522	Root Winter glycyrrhizin high producing strain	2.675
DRR006523	Root Summer glycyrrhizin low producing strain	10.281
DRR006524	Root Summer glycyrrhizin low producing strain	10.489
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.941
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.481

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.781
SRR2868004	Drought Stress (root)	10.005
SRR2967015	Control (root)	9.437

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.919
SRR9715740	Leaf	30.807
SRR9715741	Leaf	19.604
SRR9715739	Root	8.092
SRR9715742	Root	11.253
SRR9715743	Root	9.916

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.604
SRR8749028	MeJA induced 9h	11.082
SRR8749029	MeJA induced 9h	6.044
SRR8749030	Uninduced	5.087
SRR8749031	Uninduced	1.179
SRR8749032	Uninduced	0.803

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.071
SRR8400027	Control - Root	22.763