Gene detail

Gene detail information of Glyur000291s00016213

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G44120.1	2.00E-74	Ribosomal protein L30/L7 family protein
NR	AFK47136.1	1.28E-160	unknown [Lotus japonicus]
COG	YP_001190213.1	1.00E-10	50S ribosomal protein L30 [Metallosphaera sedula DSM 5348]
Swissprot	tr\|Q9LHP1\|RL74_ARATH	1.00E-150	60S ribosomal protein L7-4
trEMBL	tr\|I3T3P4\|I3T3P4_LOTJA	5.00E-161	Uncharacterized protein {ECO:0000313\|EMBL:AFK47136.1}

Sequence

Transcript Sequence

>Glyur000291s00016213.1
TACTAGTTGACAACACCCAAGAAACCCTAGTTTGCAGCTGCAGAGGTCATAGCTCTATCGAGATGGGTGAAGAGGTGAAGGCAATTGTTCCAGAGTCTGTGTTGAAGAAGAGGAAGAGGGAAGAGGAATGGGCTCTTGCCAAAAAGCAAGAGCTTGAAGCTGCTAAGAAGAAGAGAGCTGAGAGCCGCAAGCTGATCTACAGCAGAGCTAAGCAGTATTCCAAGGAGTACGAGGAACAGGAAAAGGAATTGATTCGATTGAAACGTGAGGCGAAGCTGAAAGGTGGATTTTATGTTGACCCAGAGGCTAAGCTCTTGTTTATTGTTCGCATTCGTGGTATTAATGCCATGCATCCCAAGACAAGAAAGATTTTGCAGCTGTTGCGATTGAGACAGATTTTCAATGGTGTATTNCTTAAAGTTAACAAGGCCACAGTGAACATGCTGCGCAGAGTTGAGCCTTATGTGACTTATGGGGGCTTCCACTCTTGTTCTAGATACCCAAATCTGAAGAGTGTTAGGGAACTTATTTACAAGAGAGGGTATGGAAAGTTAAACAAGGAGAGAATTCCTCTGACCGACAACTCCATCATTGAGCAGGCGCTGGGCAAGTTTGGAATCATATGCATTGAAGATCTCATCCATGAGATCATAACTGTTGGTCCTCATTTTAAGGAGGCAAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCTTTGGGTGGCTTGAAGAAGAAGAGGAACCACTATGTTGAAGGAGGTGATGCTGGAAACCGGGAGAATTACATCAATGAGCTAATCAGGAGAATGAATTAAGCTGTGGCAGTGTTCAATTATTAGGGAAATCAACCAATCTTTGTTTGTTGGCTTTATATCAATATCAGACATTTTCTCATCTGAAATTTTGAAATAGCACATTTGACTTTCATAAATCATTTTGCTAAGGTTGAATTTGTTTTTCATATTTTAAGTCTGAGAGTGATGAATTTTGTTTTAGAATATTTTCTATTTATGAATATGCCAATATGCTTGGTTTATAATGCTTAGCTTTTCAGTTTTGAATGCCATGCCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00291	44666	46623	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000291s00016213.1	PF08079.7	Ribosomal_L30_N	12	82	9.30E-24
Glyur000291s00016213.1	PF00327.15	Ribosomal_L30	84	135	1.90E-19
Glyur000291s00016213.2	PF08079.7	Ribosomal_L30_N	12	82	8.90E-24
Glyur000291s00016213.2	PF00327.15	Ribosomal_L30	84	135	1.80E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	303.510
SRR1783600	control	304.157
SRR1783602	moderate drought stress	187.173
SRR1811619	moderate drought stress	186.366

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	595.953
DRR006520	Root Summer glycyrrhizin high producing strain	591.665
DRR006521	Root Winter glycyrrhizin high producing strain	268.546
DRR006522	Root Winter glycyrrhizin high producing strain	260.799
DRR006523	Root Summer glycyrrhizin low producing strain	474.350
DRR006524	Root Summer glycyrrhizin low producing strain	473.650
DRR006525	Leaf Summer glycyrrhizin high producing strain	233.538
DRR006526	Leaf Summer glycyrrhizin high producing strain	233.489

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	663.448
SRR2868004	Drought Stress (root)	381.809
SRR2967015	Control (root)	334.309

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	218.719
SRR9715740	Leaf	202.481
SRR9715741	Leaf	204.042
SRR9715739	Root	90.990
SRR9715742	Root	211.696
SRR9715743	Root	185.299

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	700.522
SRR8749028	MeJA induced 9h	344.090
SRR8749029	MeJA induced 9h	427.880
SRR8749030	Uninduced	96.269
SRR8749031	Uninduced	58.474
SRR8749032	Uninduced	67.257

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	420.471
SRR8400027	Control - Root	362.346