Gene detail information of Glyur000290s00015815 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G19670.2 | 4.00E-140 | RING/U-box superfamily protein |
| NR | NP_001269064.1 | 0 | uncharacterized protein LOC100784508 [Glycine max] |
| Swissprot | tr|Q9SKC3|ARI9_ARATH | 8.00E-07 | Probable E3 ubiquitin-protein ligase ARI9 |
| trEMBL | tr|I1L0B2|I1L0B2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G02340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00290 | 208941 | 213466 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000290s00015815.1 | PF01485.16 | IBR | 291 | 350 | 4.00E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.499 |
| SRR1783600 | control | 20.372 |
| SRR1783602 | moderate drought stress | 15.300 |
| SRR1811619 | moderate drought stress | 15.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.885 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.024 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.177 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.075 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.192 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.177 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.425 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.247 |
| SRR2868004 | Drought Stress (root) | 44.222 |
| SRR2967015 | Control (root) | 46.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.283 |
| SRR9715740 | Leaf | 18.605 |
| SRR9715741 | Leaf | 26.537 |
| SRR9715739 | Root | 13.495 |
| SRR9715742 | Root | 21.839 |
| SRR9715743 | Root | 20.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.228 |
| SRR8749028 | MeJA induced 9h | 20.314 |
| SRR8749029 | MeJA induced 9h | 10.448 |
| SRR8749030 | Uninduced | 13.281 |
| SRR8749031 | Uninduced | 6.068 |
| SRR8749032 | Uninduced | 5.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.374 |
| SRR8400027 | Control - Root | 29.133 |