Gene detail information of Glyur000290s00015814 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05320.1 | 4.00E-147 | O-fucosyltransferase family protein |
| NR | XP_003546238.2 | 0 | PREDICTED: uncharacterized protein LOC100798043 [Glycine max] |
| trEMBL | tr|I1MFZ7|I1MFZ7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G13250.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00290 | 203291 | 204598 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000290s00015814.1 | PF10250.4 | O-FucT | 79 | 144 | 1.40E-13 |
| Glyur000290s00015814.1 | PF10250.4 | O-FucT | 159 | 375 | 1.50E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.905 |
| SRR1783600 | control | 0.992 |
| SRR1783602 | moderate drought stress | 1.138 |
| SRR1811619 | moderate drought stress | 1.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.186 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.268 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.993 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.137 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.674 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.706 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.426 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.844 |
| SRR2868004 | Drought Stress (root) | 1.949 |
| SRR2967015 | Control (root) | 1.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.236 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.103 |
| SRR9715739 | Root | 0.552 |
| SRR9715742 | Root | 2.119 |
| SRR9715743 | Root | 1.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.292 |
| SRR8749028 | MeJA induced 9h | 0.205 |
| SRR8749029 | MeJA induced 9h | 0.047 |
| SRR8749030 | Uninduced | 0.194 |
| SRR8749031 | Uninduced | 0.469 |
| SRR8749032 | Uninduced | 0.195 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.962 |
| SRR8400027 | Control - Root | 6.944 |