Gene detail

Gene detail information of Glyur000290s00015811

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G31280.1	Argonaute family protein
NR	AES64710.2	eukaryotic translation initiation factor 2c, putative [Medicago truncatula]
Swissprot	tr\|Q9SHF3\|AGO2_ARATH	Protein argonaute 2
trEMBL	tr\|G7IFV9\|G7IFV9_MEDTR	Eukaryotic translation initiation factor 2c, putative {ECO:0000313\|EMBL:AES64710.2}

Sequence

Transcript Sequence

>Glyur000290s00015811.1
ATGGAAGCCGGTAGCGGTGGCGGTTACGGCGGAAGAGGAATTCAGCAACCGGCTGAGGAGGAGGTGAGTCTTCAACCAGAATGGAGACGGCGAAGTGGCTCAGGTGGCGGAAGAGGCGAAAACCTGATTCTCCAACCAGAATGGANGCGACCAAAGCCAACCGGTTCTCCTTCCAATCCTGTTGAAGCGCCGCGCAAGGAGGANGAGAAGGAGATGCTTCTTCAACCAGAGTGGAAGCGCTCAAATCCAAGCCCAANCCCAAGTGTTTGGGAACCAGAATGGAGGCGATCAAGGTCCACTACAACTGCATATCCGTGGAACCAAAACTACGGTGTTCGGAAACCAGGGGGATCGAGTCCTTCCGGTGATTATACACTTCCCAAACTGGAAAGACTGCAAATATCAAAAGAATCNGCTACATCATCTTGTACACTTGAAAAAAGGGATAAAATTTTACCTATTCAGAGACCTGACAATGGTGGCACATTAGCAGTTCTAACAAGCAGACTTCGTGTCAATCATTTCCCTGTTAAGTTCGATCCTGAGAGTATAATATTGCATTATAATGTTGCTGTCAAACCAAAGCTTCCCTCAAAAGCTGGCCAGCCTCAGAAATTATCCAAGTCTGATCTATCCATGATTAGAGAGAAATTGTTTTCTGATGATCCTGAGAGGTTGCCCTTGGAGATGACTGCACATGACGGTGCAAAAAATATCTTTAGTGCAGTACAGTTACCAGAAGAGACCTTTACTGTGGATATCTCTGAAGGAGAGGATGAAAAGACCATTTCATATAGTGTTACCATAACACTTGTTAATAAACTCAGGCTGCGCAAGTTAATGGACTATCTTTGTGGGCAATCCCTCTCTATTCCTAGGGATATTTTACAAGGGATGGATGTGGTGGTAAAAGAGAATCCAGCTAGGCGTACAATTTCTGTGGGACGACACTACTATCCCACNAATCCTCCTTTGGTAATGAAGGATCTTCACCATGGGATAATCGCTGTTGGGGGGTTTCAGCATAGTTTAAAGCCTACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCAGTGTTGCCATTCCGAAAGNAACTGTCAGTCTTGGATTTCTTGCACGATTGTATTGATAACTTTAACTTGGATGAATTTGAAAAATTCAGGAGATATGTTGAGGAGGCTCTTATTGGGTTGAAAGTTAATGTGACTCATCGTAAATCCAAACAGAAATACGTCATTGCAGGATTAACACCTATGGTTACAAGGTATGTCACATTCCCCAATGACCATACTGGGGGCTGGAATCTCTCAAAGAATGTTGTTAGTCTTCTTANCTTTTTTAAGGATAAATATGACAAGGACATTGTATACAAAGATGTTCCTTGTTTAGATTTAGGGAAAGGCAACAAGAAGAATTATGTACCCATGGAATTTTGTGTTTTAGTTGAGGGTCAAAGATATCCCAAGGAGCGTTTGGATGGTGTTTCTGCGAAGACATTGAAAGCTATGTCACTAGCTCACCCAAATGAGAGGGAGTGTGCAATACAGANGATGGTGCAGTCAAGTGATGGACCTTGTGGTGGTGATGTTATTCGAAATTTTGGAATGAGTGTCAATACGGCCATGACAACTATTCTAGGACGTGTAATTGGCCCCCCAGAATTGAAGTTAGGTGATCCAAATGGCAAGATTATCAAGATAACAGTGGATCTAGAGAAATGTCATTGGAACCTTGCTGGAAGATCAATGGTGGAAGGCAAACCAGTTGAGCATTGGGGAATTCTTGATTTCACTAGTTTTGGGCCGTATAAGTACAAATTAAGAGGAAAGGAATTCATTCAAAAGCTAATTGGTAAATACAAAAAATTGGGTATACACATGCAGGAGCCCATTTGGTATGAAGAATCTTCAATGACGATACTTGCAAGTTATGAATCGCTATCTGAATTACTTGAAAAAATCAGCAACATTTGTAAATACAACCNAGGTCACCTACAATTTCTTCTTTGTGTAATGGCTAGAAAAAGCCCAGGTTATAAGTACCTCAAGTGGATATCCGAGACCAAAGTTGGTATTGTGACACAATGCTGTTTGTCCAATAGTGCCAATGAAGGGGAGGACAAATTTTATACAAATCTGGCTCTCAAGATCAATGCCAAGCTTGGAGGCAGTAATGTAGAGCTTAGCAATAGACTCCCTTACTTTGAGGGTGAGGAACATGTTATGTTTGTTGGGGCTGATGTCAATCATCCAGGTTCTCGGGATAACAGGAGTCCATCAATTGCTGCCGTTGTTGCAACTGTTAATTGGCCTGCTGCAAATCGTTATGCAACACGTGTTTGCTCGCAGTACAATCGAAGTGAAAAAATATTGAACTTTGGGGAGGTTTGCCTTGAGCTTGTTGCATGTTATAGGAGGATGAATGGAGTCAGGCCAGAAAGAATTGTTATTTTTCGTGATGGGGTGAGTGAGTACCAGTTTGACATGGTTCTTAACGAAGAGCTACTAGATTTGAAGAGAGCACTCCAAATACTAAATTACTTCCCAACAATCACTCTTATTGTAGCACAAAAACGACATCAAACTCGATTGTTTCCAGAGGGTTGGAGGGATGGNTCTTCCAGTGGAAACATTTTGCCGGGAACAGTGGTGGACACAAAAGTCATACACCCTTTTGAGTTTGACTTTTACCTTTGTAGTTACTATGGAAGCCTAGGTACAAGCAAGCCTACTCACTACCATGTTTTATGGGATGAGCACAAGTTTACATCTGATGAATTGCAGAAACTTATATATGAGATGTGCTTCACCTTTGCAAGGTGCACTAAACCTGTNTCTTTAGTCCCTCCTGTGTATTATGCTGACCTTGCTGCTTATAGAGGACGATTATACCACGAAGCAAGGATTGGGATGCAATCTCTGAAGTCTGCAGCATCTTCATCTTCTAAATATTCCTCATCGGTTCCACCAACAGCTTCATTTGAACAGGGTTTCTACAGGTTGCATGCTGACCTGGAAAACATAATGTTCTTCATCTGATGGACCTATCATCCACTCTTCAAGAAGCTGGGAAAAATCTTACAACTTCTCTCGCGTCTACACATATNTTGTGTCTACTGCTCTTTTCTAATCAAAACAGTGAGGAAGTTTGTGCGTTAATCTAATGGCTCACAAGTCTTGAAACAATCTTCTGTTTTAGAGGAATTTTATTCCCAGGCATATTGGTGAGTTCTTGTCAACTGGCCACTCTGGAGCTCATAGCTATATCTTCAATTAATTTTTTGATCTTCAAATGAGCTCGTANGCAGTTGCTCCTTTTCTCTTCCGTCCCTTGAGGTTATCTGGAAATTGGAATCACATAAATCGGTGCAAGCTACTCCAGTCTTCATATGTCGTGGTTGACTTGAAAATTGGGAATGATATATAATTGCCTGGTAANTCTCTTTCAAGTATCTCCTGTGCATGAATTACGTGTAAATACTGGTATCATGCTCAGTAGTTGACGTCTTCCCACTTTCCCTCTTAAACCAGATGGTGTTAAGAGACCTGAATGTCATANTCAGCTGATCATGATTACAAATACCATCATCTAGGAAAGGAATAAAACAGAGAAAACTGGACAGAAATTGAACTCATCACACCAGACATGCTGCAGTAAAGATCATGATAAGTGACATGCAAGCTATTTGCATGTTGACAGGGAAATGATTTTTACTTTATGGTATTGTAATCCCAAACACCCAGAATCTGTAGTCCCATCTTTCTTGGAACTTCCACTTGTATATGTGTATATATATATATATATATATATATCATATCA

Protein Sequence

>Glyur000290s00015811.1
MEAGSGGGYGGRGIQQPAEEEVSLQPEWRRRSGSGGGRGENLILQPEWXRPKPTGSPSNPVEAPRKEXEKEMLLQPEWKRSNPSPXPSVWEPEWRRSRSTTTAYPWNQNYGVRKPGGSSPSGDYTLPKLERLQISKESATSSCTLEKRDKILPIQRPDNGGTLAVLTSRLRVNHFPVKFDPESIILHYNVAVKPKLPSKAGQPQKLSKSDLSMIREKLFSDDPERLPLEMTAHDGAKNIFSAVQLPEETFTVDISEGEDEKTISYSVTITLVNKLRLRKLMDYLCGQSLSIPRDILQGMDVVVKENPARRTISVGRHYYPTNPPLVMKDLHHGIIAVGGFQHSLKPTSQGLSLCVDYSVLPFRKXLSVLDFLHDCIDNFNLDEFEKFRRYVEEALIGLKVNVTHRKSKQKYVIAGLTPMVTRYVTFPNDHTGGWNLSKNVVSLLXFFKDKYDKDIVYKDVPCLDLGKGNKKNYVPMEFCVLVEGQRYPKERLDGVSAKTLKAMSLAHPNERECAIQXMVQSSDGPCGGDVIRNFGMSVNTAMTTILGRVIGPPELKLGDPNGKIIKITVDLEKCHWNLAGRSMVEGKPVEHWGILDFTSFGPYKYKLRGKEFIQKLIGKYKKLGIHMQEPIWYEESSMTILASYESLSELLEKISNICKYNXGHLQFLLCVMARKSPGYKYLKWISETKVGIVTQCCLSNSANEGEDKFYTNLALKINAKLGGSNVELSNRLPYFEGEEHVMFVGADVNHPGSRDNRSPSIAAVVATVNWPAANRYATRVCSQYNRSEKILNFGEVCLELVACYRRMNGVRPERIVIFRDGVSEYQFDMVLNEELLDLKRALQILNYFPTITLIVAQKRHQTRLFPEGWRDGSSSGNILPGTVVDTKVIHPFEFDFYLCSYYGSLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEARIGMQSLKSAASSSSKYSSSVPPTASFEQGFYRLHADLENIMFFI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00290	193144	198937	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000290s00015811.1	PF08699.5	DUF1785	312	364	1.60E-10
Glyur000290s00015811.1	PF02170.17	PAZ	368	501	5.10E-25
Glyur000290s00015811.1	PF02171.12	Piwi	668	962	1.90E-83

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.314
SRR1783600	control	3.304
SRR1783602	moderate drought stress	4.143
SRR1811619	moderate drought stress	4.269

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.119
DRR006520	Root Summer glycyrrhizin high producing strain	4.167
DRR006521	Root Winter glycyrrhizin high producing strain	1.141
DRR006522	Root Winter glycyrrhizin high producing strain	1.127
DRR006523	Root Summer glycyrrhizin low producing strain	4.036
DRR006524	Root Summer glycyrrhizin low producing strain	4.251
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.037
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.994

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.023
SRR2868004	Drought Stress (root)	3.903
SRR2967015	Control (root)	3.820

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.371
SRR9715740	Leaf	1.062
SRR9715741	Leaf	1.675
SRR9715739	Root	1.131
SRR9715742	Root	5.284
SRR9715743	Root	3.852

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.459
SRR8749028	MeJA induced 9h	2.607
SRR8749029	MeJA induced 9h	1.579
SRR8749030	Uninduced	1.489
SRR8749031	Uninduced	0.703
SRR8749032	Uninduced	0.246

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.838
SRR8400027	Control - Root	7.701