Gene detail information of Glyur000290s00015810 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06880.2 | 1.00E-10 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_003547313.2 | 0 | PREDICTED: putative E3 ubiquitin-protein ligase LIN-2-like isoform X1 [Glycine max] |
| Swissprot | tr|C6L7U1|LIN1_LOTJA | 5.00E-52 | Putative E3 ubiquitin-protein ligase LIN-1 {ECO:0000250|UniProtKB:D1FP53} |
| trEMBL | tr|I1MFZ9|I1MFZ9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G13280.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00290 | 182157 | 186805 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.110 |
| SRR1783600 | control | 3.099 |
| SRR1783602 | moderate drought stress | 5.954 |
| SRR1811619 | moderate drought stress | 5.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.800 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.781 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.040 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.911 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.231 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.207 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.558 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.099 |
| SRR2868004 | Drought Stress (root) | 7.525 |
| SRR2967015 | Control (root) | 7.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.699 |
| SRR9715740 | Leaf | 13.670 |
| SRR9715741 | Leaf | 8.243 |
| SRR9715739 | Root | 0.295 |
| SRR9715742 | Root | 2.138 |
| SRR9715743 | Root | 1.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.092 |
| SRR8749028 | MeJA induced 9h | 0.770 |
| SRR8749029 | MeJA induced 9h | 0.041 |
| SRR8749030 | Uninduced | 1.612 |
| SRR8749031 | Uninduced | 0.842 |
| SRR8749032 | Uninduced | 2.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.604 |
| SRR8400027 | Control - Root | 4.532 |