Gene detail

Gene detail information of Glyur000290s00015809.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G45110.1	NPR1-like protein 3
NR	NP_001238658.1	NPR1-1 protein [Glycine max]
Swissprot	tr\|Q8L746\|NPR3_ARATH	Regulatory protein NPR3
trEMBL	tr\|B8XQT5\|B8XQT5_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G02430.1}

Sequence

Transcript Sequence

>Glyur000290s00015809.1
CCAAAACCACTTCACTTCCTTATCGACACGCCCCTCTCTCTTCACCCTCTCTCTTCACCCTCACAGCTACTACTACGCGACGCGTACAGTAACACCTCTCTCTCTCTCTCTCTCTCTCTGAAACTCTCTCTCTCTAATCCAATGAAAACGAAAAACGAAACTTCGGGGATGGTGTTGGTGCGTGTGTGTCATTGACCAGCAGCATTTCTTATTCTTTTCTCTGCTACTTCCACCTCTTTCCCCTTCTGAAACTTCCTTGATTTTGATGCCTTGACTTGCTATTTTCTCTCCTTCTTACAAACACTTTTCTTCTGTATTGCACGGTGTGATTCTTCTCTTTCTCTCTGGGTTTCTGGGTATATCAAAGTTCGNACCTTTTTCTGATTTGGATGGATCTGATGGGGAACCTCCAGAGTTTGGTTTTCTGGGGTGGGGCTGTTCCTCCTTGTTCTTCCTTCTCAGTTTTTGGCTTTGTAGGATTATTATGAATTAAGCTCGTTTTTAATTGAAAAAAGTGAACTTTTTTTGGGGGTCAAATGTTAAAGTGAATTAATTAATGAATTAATTAATTTTCTGTTTTTGTTTTTGTTTTTGTTTTTTCAATTTTGGATCAGTTTTGGGTTTGGTTTGATTATGCTGTTTTGGTGGCTCTGGAAACTCAAACAGTGGGCTTCTTGATCCTTTTCGCAGTTTTAGCTGTGATAAAAATTTGCTGACATACCAAATAAGCTCAGCTTTTGAAATAGGGAATGACNCTTTAGTTGATTGTTTTCAACTTACCTTTGAGCCGTGTACTCTTGGAATTTTGTGACGTGAGATTTTGCGGCNAACACTTATATTCAGATTAGTGTTTATCATTTACACATCATATATATAGTTTTCTATTTATAGATTGCTTTTGTTTTTAGGTCTTCTGCTGGAAAATTCAAAAGGGTATTATTTAGTGTTATCATCATATCCCACCAACGTGTCAGCAATTATAATTTTTTGAGTTTCTGATATCAGAAGATATGTTATAGGCTCACATAGGTTCTCAAGTTGATTCAATGGCTCATTCAGCTGAACCCTCATCATCTTTGAGCTTTACATCATCTTCTCACTTGTCAAATGGCTCAGTTAGCCACAACNTATGCTCTTCTCATGCCTCTGATCATGGACCTAACCTTGAGGTTATCAGTTTGAGTAAGCTTAGTTCTAATTTGGAGCAGCTTTTGCTTGATTCTGATTATGACTATAGTGATGCCCACATCATTGTGGAGGGAGTTTCTGTTAGGATACATAGATGTATTCTAGCCTCTAGGAGCAAGTTTTTCCTTGAATTGTTCAAGAGAGATAAAGGGTCATCAGAGAAGGAAGGGAAATCCAAGTATTGCATGAGTGATTTGTTGCCTTATGGAAAGGTTGGATATGAAGCCTTCCTCATATTTCTGGGCTATGTATATACTGGTAAACTCAAGCCCTCTCCAATGGAGGTGTCTACGTGTGTTGACAATGTTTGTGCCCATGATGCTTGTGGACCTGCAATTAACTTTGCTGTGGAGTTGATGTATGCCTCTTCCATTTTTCAAATACCAGAGTTGGTATCGCTTTTCCAGCGACGTCTTCTTAACTTTGTAGGAAAGGCTCTCGTGGAAGATGTCATCCCGATTCTTATGGTTGCTTTCCATTGTCAATTGAGTCAACTTGTCACTCAATGTGTTGACAGGGTGGCCCAATCAGACCTTGACCAGATCTCAATTGAGAAAGAGCTTCCCCTTGAGCTCTCAGAAAAGGTTAAAGTGCTCCGCCGCAACCTCCAGCAAGATGCTGAAAATGACACTCCGGTAGTGGATCCTTTGTCTCTAAAACAAATCACTAGAATACACAAGGCATTGGACTCGGATGATGTTGAGCTTGTTAAACTTCTTTTGAACGAGTCAAACATCACTTTAGATGAAGCCAATGCGCTCCATTATGCTGCAGCCTACTGTGACCCCAAGGTTGTTTCTGAAGTACTTGGATTGGGTCTGGCTAATGTCAACCTTCGGAACTCTCGGGGGTACACAGTGCTTCACATTGCTGCCATGCGTAAGGAGCCTTCCATTATAGTATCTCTTCTTACAAAAGGGGCTTGTGCATCAGATTTGACTTTTGATGGCCAGAGTGCTGTTAGTATCAGTAGGAGGTTGACGAGGCCGAAGGATTATCACATAAAAACAGAACAAGGGAAAGAAACAAACAAAGATCGGATATGCATTGATGTTCTTGAAAGAGAAATGCGGAGGAATCCATTGGCTGGGGATCCCTCTGTGTCTTCCCACACAATGGCTGATGATCTCCACATGAAGCTACTATACCTTGAGAACAGAGTGGCTTTTGCAAGACTATTCTTCCCTTCAGAAGCCAAACTAGCCATGGACATTGCACATGCTGAAACAACCTCTGAGTTTGCCGGTCTTTCGGCATCAAAAGGATCGAATGGCAACTTAAGGGCAGTTGATCTCAATGAGACACCCGTAATGCAAAACAAAAGACTTCTTTCTAGGATGGAAGCCCTTATGAAAACAGTGGAGATGGGGCGGCGCTATTTTCCGCATTGCTCGGAAGTGCTGGATAAGTTCATGGAGGATGACCTGCCTGACTTGTTCTACCTTGAGAAGGGGACCCAAGAGGAGCAGAGAATCAAGAGGATGCGTTTCATGGAGCTTAAAGATGATGTCAACAAGGCCTTCAACAAGGATAAGGCTGAGTTTAGCCGCTCTGGGATTTCATCTTCATCATCCTCTTCATCCCTCAGAGATTCTGTACATTACAAGGCTAGAAAAGTGTGAAAAAGAAAAGTCACTCACACACTATCTTTGTTTCATGACTTNTAGCATACATATTTAGTGCAACATTTAACGGTAATACCCACCACCACCACCAACTTCATCTGTATAATTGTAAAAGCAGGAAAGTAAANCTCTTGCTATGTCTTATGTAACCAACATATATGTAAGTATTTTTTTTAAATAATTTCCTATTCCCTCATTTTCGTAGTGAATTTTACAGTATAAAGTTATAAATTTTGACAAAGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00290	174519	179854	+

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF
Ubiquitin Family	BTB
EAR motif-containing Proteins	TRAF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000290s00015809.1	PF00651.26	BTB	60	180	4.00E-12
Glyur000290s00015809.1	PF11900.3	DUF3420	225	273	4.80E-13
Glyur000290s00015809.1	PF13637.1	Ank_4	299	342	6.10E-07
Glyur000290s00015809.1	PF12313.3	NPR1_like_C	372	574	3.50E-103

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	49.281
SRR1783600	control	49.523
SRR1783602	moderate drought stress	45.241
SRR1811619	moderate drought stress	45.181

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	50.464
DRR006520	Root Summer glycyrrhizin high producing strain	49.886
DRR006521	Root Winter glycyrrhizin high producing strain	45.229
DRR006522	Root Winter glycyrrhizin high producing strain	44.171
DRR006523	Root Summer glycyrrhizin low producing strain	121.778
DRR006524	Root Summer glycyrrhizin low producing strain	122.099
DRR006525	Leaf Summer glycyrrhizin high producing strain	81.445
DRR006526	Leaf Summer glycyrrhizin high producing strain	81.188

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	83.935
SRR2868004	Drought Stress (root)	149.316
SRR2967015	Control (root)	122.859

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	119.358
SRR9715740	Leaf	99.381
SRR9715741	Leaf	168.482
SRR9715739	Root	49.104
SRR9715742	Root	117.868
SRR9715743	Root	100.689

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	124.562
SRR8749028	MeJA induced 9h	136.858
SRR8749029	MeJA induced 9h	158.365
SRR8749030	Uninduced	272.130
SRR8749031	Uninduced	261.115
SRR8749032	Uninduced	200.327

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	70.796
SRR8400027	Control - Root	84.563