Gene detail

Gene detail information of Glyur000290s00015805

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G08490.1	chloroplastic NIFS-like cysteine desulfurase
NR	XP_004502227.1	PREDICTED: cysteine desulfurase 2, chloroplastic-like [Cicer arietinum]
COG	YP_007156093.1	cysteine desulfurase [Anabaena cylindrica PCC 7122]
Swissprot	tr\|Q93WX6\|NFS2_ARATH	Cysteine desulfurase 2, chloroplastic (Precursor)
trEMBL	tr\|I1L0B9\|I1L0B9_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G02450.5}

Sequence

Transcript Sequence

>Glyur000290s00015805.1
CTTGAATCTTTGCAGCATTATATATAACTCAAGAGATTCACCCCGAGTTTGGATCTGAACAAGAAAACGTTTTTCCTCACACTCCCCATTTCCCACGATGTGTTTGAAGTTGGGGATAATTGTAAATGAGCTTCTCACAATTGAACCCGAACTAGAAGAGATGACGCTATAGTGACAGATCGCATAGTGTGGAGGATGGAATGGATGCGGTTACTGGCAGAGATGGGCAAAAATGGGAGGCACAGATAGNAGGAGAGAGCTGACAAGAAAGAGGGTAAATGTGGAAAATGGAAAATAGCACCGCTTCTTCTCTGTGCTCTTTCTTCGCTAGTTTAGTTTGCGAAGAAACGAAAAACTAGTGGGACCCGCGTGTTTTATTCTCTCTTCGCTATTTCTTTTCTGAACCAAACAGGGTGAGCTTCCTCGTCCTCCTCTCTTTCTTCTTCATCTCCTTCGTTTCAAAATCAGCTCTACCAATCAGAGGGTNAACGTGCGTAACACAGGATTGAATCCTTAGCTGTTCTTTCCTCCACTNTATTCAATACTCACTTGAACCGCACACACATATTCAGTCCCCTTCCTCAGAAAAGACAAGTACAACGCTGACCGTGACTGCGAGGGTTTTCCCTTTCTTCTGNAACTGTTTCTTTCAACGAGATATATATAATGGAAGTTTTGCTGCCAAAGCTTCCATCTTTCAAATTTCCAAGTCCCGGTTATTGCTGCTCAATCACCACTAGGAGCTCATCGTGTGTCAGATTTGGGTTCCGTCGTTTATCTTCTCTCTCTGTTGTTTGTGCATCAACGGTCAATGATGCAGTGGTTGAACCAACACTTGTCTCTCCTTCTCTGGGTCACTCCACCCGACCCCATTTCCCTATACTTCACCAGGAAGTAAATGGCTCAAAACTTGTTTACTTAGACAATGCAGCAACTTCTCAGAAGCCCACAGCTGTTTTGAAGGCATTGCAGAACTATTATGAAGCTTACAATTCTAATGTGCATCGGGGCATACATTTCTTGAGTGCAAAGGCCACAGATGAGTATGAATCAGCTAGAAGGAAGGTTGCAGCTTTTATAAATGCTTCTGATTCCAGAGAAATTGTATTCACAAAAAATGCTACTGAAGCTATCAATCTAGTGGCTTATTCTTGGGGCTTATCAAATTTAAAACGAGGAGATGAGATCATACTTACAGTTGCTGAACATCACAGTGCGATTGTTCCATGGCAACTAGTAGCTCAAAAAGTTGGGGCTGTTTTGAAATTTGTGAATTTAAACCAAGATGAAATTCCAGATATAGACAAATTGAAAGAAATGCTCTCAGGGAAGACCAAAATAGTAGTTGTCCATCATGTTTCAAACGTTCTTGCTTCTGTTCTTCCTATTAGAGATATTGCACATTGGGCACATGATGTTGGAGCAAAAGTTCTTGTAGATGCCTGTCAGAGTGTTCCACACATGACGGTTGATGTTCAGAGCCTTAATGTTGACTTTCTTGTTGCTTCCTCTCACAAGATGTGTGGGCCTACCGGCATTGGATTCTTATATGGTAAAATGGACGTCTTGTCTTCCATGCCTCCATTTTTAGGTGGTGGTGAAATGATTTCTGATGTATATCTTGATCATTCAACTTACGCTGAGCCTCCATCCAGATTTGAGGCTGGAACACCAGCTATTGGGGAAGCAATTGGTTTAGGAGCAGCAATTGATTACTTATCTGGGATTGGAATGCAAGCCATACACGACTATGAGGTGGAGCTGGGTACATATCTGTATGAAAGGCTTCTTTCAGTCCCAAATATTCGCATTTATGGGCCAGCACCTTCAGAAAAAGTCAAACGAGCTGCTCTTTGTTCTTTCAATGTTGAGAATTTGCACCCTACTGATCTTGCAACATTTCTGGACCAACAGCATGGAGTGGCTATCAGATCAGGTCACCATTGTGCTCAACCCCTCCACCGCTATTTAGGAGTCAGCGCAAGCGCACGTGCTAGCCTCTATTTCTACAACACTAAGGAGGATGTCGACAACTTCATCCAGGCCCTCCATGACACAGTCAGCTTCTTCNATTCATTTAAGTAGTCAGGATGTATTTATATGTAATTAAATTTTGTTTATATTACCAGATAAGGTTGGTTCAATTAATTGGTAGGCCAAGCAAGCTGTGCCAATGAAATGTTATTGAATTCGATTCCTCTTGCTGATCTCATAGGTAGCTAGGCATCCACTAATTACAGTACGTCTTGTCTTAATTGTGGAACAACCTATCTACCTCCTGAACTTTTATGTATACAAAAAAAATGCTCATATAAGTTAGATTCTTCTCCTTTCTTATTGTTTGAAGGTGAATAATATCCACTTTTACATTGGATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00290	151411	157444	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11717	sufS	EC:2.8.1.7 4.4.1.16	Selenocompound metabolism	map00450

Gene Ontology

biological_process

GO:0006534 cysteine metabolic process

GO:0008152 metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0030170 pyridoxal phosphate binding

GO:0031071 cysteine desulfurase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000290s00015805.1	PF00266.14	Aminotran_5	83	457	6.50E-146

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.663
SRR1783600	control	21.847
SRR1783602	moderate drought stress	19.049
SRR1811619	moderate drought stress	19.325

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.243
DRR006520	Root Summer glycyrrhizin high producing strain	24.129
DRR006521	Root Winter glycyrrhizin high producing strain	13.380
DRR006522	Root Winter glycyrrhizin high producing strain	12.947
DRR006523	Root Summer glycyrrhizin low producing strain	27.997
DRR006524	Root Summer glycyrrhizin low producing strain	28.199
DRR006525	Leaf Summer glycyrrhizin high producing strain	48.576
DRR006526	Leaf Summer glycyrrhizin high producing strain	48.380

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.346
SRR2868004	Drought Stress (root)	26.846
SRR2967015	Control (root)	24.609

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	54.848
SRR9715740	Leaf	75.326
SRR9715741	Leaf	52.533
SRR9715739	Root	13.456
SRR9715742	Root	15.663
SRR9715743	Root	15.254

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.686
SRR8749028	MeJA induced 9h	19.317
SRR8749029	MeJA induced 9h	10.099
SRR8749030	Uninduced	12.802
SRR8749031	Uninduced	6.969
SRR8749032	Uninduced	5.722

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.320
SRR8400027	Control - Root	31.744