Gene detail

Gene detail information of Glyur000290s00015798

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45170.1	4.00E-101	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
NR	XP_004486444.1	0	PREDICTED: uncharacterized protein LOC101492459 [Cicer arietinum]
COG	YP_007060782.1	1.00E-08	haloacid dehalogenase superfamily protein [Synechococcus sp. PCC 6312]
Swissprot	tr\|Q94K71\|GPPL2_ARATH	3.00E-13	Haloacid dehalogenase-like hydrolase domain-containing protein At3g48420 (Precursor)
trEMBL	tr\|A0A072V5X9\|A0A072V5X9_MEDTR	0	Haloacid dehalogenase-like hydrolase {ECO:0000313\|EMBL:KEH37036.1}

Sequence

Transcript Sequence

>Glyur000290s00015798.1
CGGTCACATGGCGTTGGAAAATTGAAAAATATCAGATCGGAAATAAAGTAGTGAAGCTGCGTAGTNTCTCCTACAACACCACATAGCTATGGCAACAACAACACGGACAGTGGCATGTTCAATTCTCCCTCAGCATACACTGCGACGACGCACGCGCCTTCCACGTGGCACACTCAACGGCACTCCCTACCTTCACGCCGCGAATCACGCAACTGTTTCCCTTCGATTTTCCCCTTCCGATTTTCCCGGAAAATCTTCGCGCCANACTGCCTCCTCCGCTTCATCATCCACCACCGACCACCACACATCTCAAGACCTCGCCGTTCTTCTCGAAGTCGACGGGGTTCTTGTGGATGCATACCGTGTTGGAAATCGCCTAGCCTTCAATAAAGCATTTGAGAAGCTTGGGCTCGATTGTGCCAACTGGAACGAACCTGTCTATTCAGATCTTTTAAGGAGGAGCGCTGGAGATGAGGAAAAGATGCTATTCTTGTATTTTAATCGAATTGGGTGGCCTTCTTCTTTACCCACAAACGAGAAGGGACTGTTCACAAAAAGTGTTTTGCAGGAAAAGGTAACGTCCTTGCANTTGATTTTGATGAATGGGATACTACTAATAAATAATTTGTGTGCTATTTGTGCTTTTACTTTGGTGTATGAGGACCATAAGGAAAAAGCAATGGAAGAGTTTGTGATGTCAAAGAGTCTACCTTTACGACCTGGTGTTGAACAGGATTATTTGTTAGTTGAGAGATTTGTTTCAGGCCCAGGAATAACTATAAGGATAGTTTTGAGTAACGTCTCCATTAACAGGTTTATTGATGATGCATATAATGAAGGAATTCCAGTGGCAATATTAACAGCCTACTGTAAAAGGGGTGATAATATTACAAGGACCATAATGGAAAAGCTTGGTAATGATCNAAGCACAAAGGTAATTACTGTGGGGAATAAGGAGGTTGAGCAAAGTGTATATGGTCAACTCGTCTCAGGAAAGTTAATTGCTTCTGGTTTGGATGAAGAGCTTGCCAAGGAAGCCACAATAGCAGCTTCTGCTGAGAGACAAAGGTTAGCAAAGGAGGTAGCATCCATGCTAAAGTTGAGTGTTGAGATTCATACCAGCTCTGAAAGTCTAGATAAGATTGTGGCTGCGCTACATGCTGGAGCTGAATATGCAGGGTTACCTCTCTGCAACTGTGTCCTTGTTGCAGGAAGCCAATCTGGAGTAGCTGGAGCTGAACGGGTGGGCATGCCATGTGTTGTTTTACGGAGCAGTTTGACATCTCGAGCTGAGTTCCCATTAGCAAATGCCACAATGGATGGGTTTGGAGGTCCAGATCTAACAATTTCAAAATTACGCAATCTATGCAAGAAACAACCAAAGGATTGAATGATTTTTCTATCAAATTATCTTGCCCAAGAAATTTGCAATAAAAACAGCATATCCACACTTGCTCTGGGTTTGAAGCTTTTGCTGGCAGGCAAAGAGAATGGGCCTCTAGAAAGGGAGTTTAAGATAATGTTTGCTGGTATGATAATTCCATCTCTCTCTCTCTCTCTCTCAACAGCATAAGGAAAGGCCATTCTTGTCAGTCGTTGTGGCTGTGGAGAAGCTCTAACAGCAGTTGCTGGGTAAAATATAATTGCAACTATTATTGTCCGATTTGATGATACTTTCATCTGAACAGAACTGAGATCTTTCATGCAGTGTAGATACAAGATGGTTATGTATTTCTTTTCTGTAACACTTGAAAGAGGCACTGTGATAAGTTAGAAATGACCTGTGGGACTGAGTTGTCAGTCTTTTTGGTAACTGAAGTGGCCCTTGGCCTTGCGCACAAATGATTTCAGCGGAGATATCACTCAGTTTCACAGGATTATGAAAATTGCTAAACTTTAAAGAATTTGCTTACAATATTGGTATTCAGTCACTATTGGCCGAATAATAGTTTGTAGTAGAGCCCAAATAGGGGTCCTTCCTATATTCAGATAATTTACACGTTATAGTAAAGAAGATAAGCAAAATCCGGTTGTACAAAACTGATCTCGCAAAGCAACCCTAACTGGTGCATGTTCTATTCTGATGCCAACCATTAACTTAAATAGTCATGAAAATTCAGCATCTGGAACGTTTGTTCTTCGCCTATGAGACAAGTTTGTGGTTGTGTATTCATTATCACCGTCAGATGAGTCAACACTAGATACAGCCGAATTGGGGATTGAGCTTGATACNGAGTCAGGTCTTTCCATCTGATTTCTGAATATCTGAGCAGCGGAACGTTGTGATTGTGGTTCTGTTCCTTCAGGTGCTCGATTGCCCCCCTGAGCTTCTTCAGCGAGACGTTTAAGAAGGTTCATAACTGTGGGGAGGAACTTTGATGAAATGGCTAGTAGCCCAGCCAGCTGCAAACAAAATATGCACAAGTAGACAAAAATCAGACAGTGCTAGTCACGTTTGGGAGCTGACATCATTCAACCATCCCTTCTAATATTATATTTTATTATTTCTAATTTTACGATTCACTTCCAACAAAATAACGTCAACAAGGCAAATAAGAATTTTTGAACTAGTAAATCCTACTCACCACACTTTTATTTAGTGAATAACAGAATTTTTGCGTTATAGACCATTGTTATTTAAAACACATGACAAACAATTTTGCGCCTCTAATTTGTGTAAGCTTGTACATAGCAATTTCTTACACCTGCTCTTCCCACCCCACATTGTCTCCAAGGTGCTGTGTTANGAAGTCAATTGTAATTCAGTTAGTAAATCTGTTAGTTAGTGGTGTTAGTTAAGTGGCGGTTAGTTAGTTAGTTGTTAAGTGAAGTGTTAGTGAACTAACTAATGACCGCGTGTGTGTAAGAGAGCCAGTGAATCCGATGTGGGACTTCACAGTAAGTGATGTATGAAAGGCATATGTGATAATGAATGAAATTAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00290	107413	114331	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000290s00015798.3	PF13419.1	HAD_2	79	202	2.00E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.142
SRR1783600	control	16.256
SRR1783602	moderate drought stress	17.299
SRR1811619	moderate drought stress	17.069

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.060
DRR006520	Root Summer glycyrrhizin high producing strain	19.020
DRR006521	Root Winter glycyrrhizin high producing strain	19.329
DRR006522	Root Winter glycyrrhizin high producing strain	19.646
DRR006523	Root Summer glycyrrhizin low producing strain	15.136
DRR006524	Root Summer glycyrrhizin low producing strain	14.832
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.289
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.771

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.958
SRR2868004	Drought Stress (root)	13.377
SRR2967015	Control (root)	13.862

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.187
SRR9715740	Leaf	25.748
SRR9715741	Leaf	22.633
SRR9715739	Root	3.071
SRR9715742	Root	7.067
SRR9715743	Root	7.002

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.073
SRR8749028	MeJA induced 9h	8.618
SRR8749029	MeJA induced 9h	8.548
SRR8749030	Uninduced	5.411
SRR8749031	Uninduced	2.984
SRR8749032	Uninduced	3.452

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.263
SRR8400027	Control - Root	17.132