Gene detail information of Glyur000290s00015796 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31330.1 | 7.00E-80 | photosystem I subunit F |
| NR | AFK41712.1 | 1.03E-136 | unknown [Medicago truncatula] |
| Swissprot | tr|Q9SHE8|PSAF_ARATH | 2.00E-120 | Photosystem I reaction center subunit III, chloroplastic (Precursor) |
| trEMBL | tr|I3SN70|I3SN70_MEDTR | 4.00E-137 | Uncharacterized protein {ECO:0000313|EMBL:AFK41712.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00290 | 98940 | 99614 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000290s00015796.1 | PF02507.10 | PSI_PsaF | 51 | 223 | 9.10E-85 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.507 |
| SRR1783600 | control | 2.297 |
| SRR1783602 | moderate drought stress | 5.366 |
| SRR1811619 | moderate drought stress | 5.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.332 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.061 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.321 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.645 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.893 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.776 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2194.998 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2278.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 62.873 |
| SRR2868004 | Drought Stress (root) | 71.426 |
| SRR2967015 | Control (root) | 36.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1764.993 |
| SRR9715740 | Leaf | 1650.708 |
| SRR9715741 | Leaf | 1299.630 |
| SRR9715739 | Root | 11.627 |
| SRR9715742 | Root | 12.563 |
| SRR9715743 | Root | 12.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 58.361 |
| SRR8749028 | MeJA induced 9h | 76.813 |
| SRR8749029 | MeJA induced 9h | 68.395 |
| SRR8749030 | Uninduced | 27.892 |
| SRR8749031 | Uninduced | 10.675 |
| SRR8749032 | Uninduced | 47.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 37.249 |
| SRR8400027 | Control - Root | 30.814 |