Gene detail

Gene detail information of Glyur000290s00015790

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54950.1	1.00E-98	patatin-like protein 6
NR	XP_004486445.1	0	PREDICTED: uncharacterized protein LOC101492793 [Cicer arietinum]
COG	YP_006866470.1	7.00E-32	patatin-like phospholipase [Psychroflexus torquis ATCC 700755]
Swissprot	tr\|Q9SV43\|PLP7_ARATH	1.00E-129	Patatin-like protein 7
trEMBL	tr\|I1L0D2\|I1L0D2_SOYBN	0	Patatin {ECO:0000256\|RuleBase:RU361262}

Sequence

Transcript Sequence

>Glyur000290s00015790.1
CTCATTCTGATTAATTCCTCACTCACTATATAAACCCCCACCCTTCTGCTCCATTCTTCATCATCACTCACCATTCAACTTCAAGTCTTCAACAACAACAACAACACAAATTCTCTCTCTCTAAAACTTTCTCTCTCTTAAGAAAAACCTTCACACGCACGAATTGCAGAAATGGCGGCACTGTCCACATTGGAGAACCTGAACACAATTGACACTAACTTCGAAGTTGACAAGCTCACCTACGAAATCTTCTCCATCTTGGAGAACAAGTTCCTATTCGGCTACGGCGACACCGAAAACCCCAAAAATTCGGTTCCCAATTCCATTCAATTCCCTTCAAAGGACGCGAAACCGGCGAAACACGTTGCCGGCAAGGTCAGGATCCTCTGCATTGACGGCGCCGGCGCCACCGACGGCATCCTCGCCGCCAAGTCCCTCGCTCACCTCGAGGCCTGCTTCCGGCGCAAGTCCGGCAACCCCAACGCATCCGTCGCCGGATACTTCGACGCCGTCGCCGGTTCCGGCGTCGGTGGTGTCCTCGCCGCGCTTCTCTTCACCCGCGGGAAGGACGGGCTGCCGATGTTCACCGCCGAGGAGGCTCTGAAGTTCCTGGTCGACAACCGCCGCAGGATCTCCCGGCGGCAGGGGGTGTTCCGGCGAGTTCTCCGGCCGTCAAAATCGGAAAAGCTTTTCCGGAAGGCNTTCGGCGAGTGCACGCTGAGGGACACGCTGAAACCGGTCCTGATCCCCTGCTACGACCTCGTCACGCGCGCTCCCTTCGTTTTCTCCCGCGCCGACGCGCTAGAAATGGACGGCTACGATTTCAAGATGCGCGACGTGTGCGCCGCCACGTCAGCAGACCCATCACGCGCGGGCCCTACCGAGGTGAGGTCCATCGACGGGAGGACGAGGATCGTGGCCGTCGATGGAGGGGTCGCGATGAACAATCCAACGGCCACCGCCGTCACGCACGTGCTTAACAACAAGCTCGAGTTCCCATTCTGTAACGGCGTCTCTGACTTGCTGGTCCTGTCACTCGGTAACGGAGAGTCAGACTTCAACGCCGTTAAGTCACCGTCAGGTTTCGTTAAGATCGCTGGCGAAGGAGCTTCTGATATGGTTGATCAAGCTGTATCAATGGCATTTGGAGAGTGTCGGGTGAGCAATTATGTGCGGATTCAATCAAATGGGATCATGGCAAAGGCGACGCAGGGGAAGACGACAGGGAAAACGGCGTCGGATTTGTTGGCGGTTTCAGAGGACATGTTGGCACAGAAGAATGTGGAGTCTGTTTTGTTTAAAGGGAGAAAGGTAGTGGAAAACACAAACTTGGATAAGTTGGAGTTGTTTGGGGGAGAGTTGATTAAGGAGCAAGAGAGGAGAAAAACCAGCATTTTACCAACGGTTNTGTTGAAGAATGGCTCTCCCTCGCCTAGAACTTCTTCTGCTACTACTTTGTCCTCTTTGTCTTCGAGCTGTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00290	69231	71018	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006629 lipid metabolic process

GO:0008152 metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000290s00015790.1	PF01734.17	Patatin	72	264	1.90E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.749
SRR1783600	control	2.788
SRR1783602	moderate drought stress	2.333
SRR1811619	moderate drought stress	2.323

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.033
DRR006520	Root Summer glycyrrhizin high producing strain	13.439
DRR006521	Root Winter glycyrrhizin high producing strain	0.298
DRR006522	Root Winter glycyrrhizin high producing strain	0.292
DRR006523	Root Summer glycyrrhizin low producing strain	20.285
DRR006524	Root Summer glycyrrhizin low producing strain	19.126
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.513
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.519

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.546
SRR2868004	Drought Stress (root)	38.687
SRR2967015	Control (root)	45.837

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.884
SRR9715740	Leaf	0.826
SRR9715741	Leaf	3.477
SRR9715739	Root	15.291
SRR9715742	Root	17.044
SRR9715743	Root	18.895

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	49.760
SRR8749028	MeJA induced 9h	27.792
SRR8749029	MeJA induced 9h	43.658
SRR8749030	Uninduced	11.548
SRR8749031	Uninduced	11.285
SRR8749032	Uninduced	25.854

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.850
SRR8400027	Control - Root	28.498