Gene detail

Gene detail information of Glyur000289s00018733

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G50460.1	6.00E-22	secE/sec61-gamma protein transport protein
NR	XP_003616767.1	2.81E-40	Protein transport protein SEC61 gamma subunit [Medicago truncatula]
Swissprot	tr\|P38385\|SC61G_ORYSJ	1.00E-40	Protein transport protein Sec61 subunit gamma
trEMBL	tr\|V7BB77\|V7BB77_PHAVU	2.00E-40	Uncharacterized protein {ECO:0000313\|EMBL:ESW13696.1}

Sequence

Transcript Sequence

>Glyur000289s00018733.1
CAAAAAAAACATTTTATTTTAAAAGCTTAATTGCATTTTTGTTTTTATCCCTAACCTAGCCTATTTTAGTATTTTAAATCAACCACAACTCGTTGACCAAAAAAAGAAATCAACCACAACTCCTCCCTGTTTTATTTTAAATAAACCATAGCAGANCCCCTCCCTAAACAAATCACTACTTCAATCCTCAGATCGAAACAAAACGCAAAGAGAAAGAAAAAGAGAGAATGGACGCCATNGATTCCGTATTCGATCCACTCAGAGAATTCGCAAAGGACAGTGTCAGGCTCGTCAAACGCTGCCACAAACCCGATCGCAAAGAATTCTCCAAGGTTGCAGTGCGTACTGCAATTGGTTTCGTTGTGATGGGATTCGTTGGCTTTTTCGTGAAGCTCATCTTCATCCCAATTAACAACATCATCGTCGGATCTGGTTAGGATGAGGGACTACAATCGCCTCAGGAATTCAAGTTGTCGAGCAAAAGGAGGCAGAAAAGAGTTCCCGCTTCACTAGATCGTTCAGTGCACTTTAACTTAGTTCTTTATTTCAGTTTTGGTTTTTCCTTATTTCTTATGTTCTGAAGAATTACAGTTTATTTAAAATGTAAAATTTTACTTTTCGATGTTAGAACTTGACACATTGTCTGGATTTAGTTAGAGGAAAATATTTGATAAGTAAGTGTACTTTTGCCTTGATTCCTGCTAACCTTTTTAGTTTTCTTTATTTTATGATCAGAACAGTTTATAGGACTAAAAACTGTTCTGTAGGAACGAACATTAATAGGAACGAACATTGAATTCCAGATAAATGTTATGTAGAACTAACGAAGAAGATCTGAAATATCATGTAACATCTACAACAATATGACAGCACCACGTCGGTCAACAAAATCTTAAGGGAATGGGCATAGCGATAAAATCATACTGTTTCAATTTAAAATCTTTTGGCAAAACCACTCTGTGACCCTTCTTCTCTTCACCCTTCTTCTCTTCACCCTTCTTCTCTTGCTTATCCCAATTTACGCTAAGTTTTAGTTTTCCATAATAAACAAAAATAATGTAAAGCTGCAGGAACAAAATGGCAAGGATTTAGATTTAAGTTTTTTGGTTACACAGGTGAGAGAGAGGGTGCTGTTGTGGAGGTGGGAAAAGGATAACCACAACTTAGAAAAGAGCATTCTCAAACCCAAATCCAAGTAGCTTTGACAGAACACTTCAAAGAAGGGCTCAGAGCGTAGCATATCAGGCCAACTGCACTCGACGCAAAGCCAACTAGTCTCCACCACAACTTCTTGTTACCAACACTCTCTAAAACCTGATATACTTCAGAAAGCCTGTAAAAAATCTGCAATGTAGCAAGAAGAGGCTTTTCTTGCTTGCAAATTTTATAAAACTTTCACTTCATGTCAAGATTAATAGAATTTGAACACATAAAACCATTAAACTTGCCTTTAGCAACTGAGAATTTGCCTGGATTAACTNGGCCAGTTTGACTGAAATGAAATTGAGGTTTTCTAACTTGCACATCATGTCAAGATGTTTAACTGGACCAAAAGAAAAAAAGAAGATAAACTTACGTAAGAATTAAGAAACACGCATGCATCCATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00289	184812	188315	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006605 protein targeting

GO:0006886 intracellular protein transport

GO:0015031 protein transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000289s00018733.1	PF00584.15	SecE	11	66	1.20E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.933
SRR1783600	control	19.456
SRR1783602	moderate drought stress	16.429
SRR1811619	moderate drought stress	16.201

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.159
DRR006520	Root Summer glycyrrhizin high producing strain	41.627
DRR006521	Root Winter glycyrrhizin high producing strain	19.653
DRR006522	Root Winter glycyrrhizin high producing strain	18.936
DRR006523	Root Summer glycyrrhizin low producing strain	34.165
DRR006524	Root Summer glycyrrhizin low producing strain	32.681
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.527
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.465

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	172.904
SRR2868004	Drought Stress (root)	120.840
SRR2967015	Control (root)	117.310

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	75.812
SRR9715740	Leaf	72.434
SRR9715741	Leaf	90.826
SRR9715739	Root	17.484
SRR9715742	Root	33.196
SRR9715743	Root	29.993

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	298.067
SRR8749028	MeJA induced 9h	133.041
SRR8749029	MeJA induced 9h	208.032
SRR8749030	Uninduced	139.161
SRR8749031	Uninduced	102.037
SRR8749032	Uninduced	196.104

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	153.709
SRR8400027	Control - Root	139.859