Gene detail

Gene detail information of Glyur000289s00018723.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G44480.1	5.00E-45	beta glucosidase 17
NR	KEH26885.1	2.92E-83	glycoside hydrolase family 1 protein [Medicago truncatula]
COG	YP_004449345.1	1.00E-38	beta-galactosidase [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|P26205\|BGLT_TRIRP	5.00E-63	Cyanogenic beta-glucosidase (Precursor; Fragment)
trEMBL	tr\|A0A072UM41\|A0A072UM41_MEDTR	1.00E-83	Glycoside hydrolase family 1 protein {ECO:0000313\|EMBL:KEH26885.1}

Sequence

Transcript Sequence

>Glyur000289s00018723.1
GCAAATTCTGCAAATTCTGTATAGTTATGGCATTGAATTTTCTTCTTCTTCTCTCTGGAATTTTAGTACTAACTCNTAGCTCAGTGGCTATTATTGAAGCTGCAAAGGTAGTGTTCCCTGATGACATTAGCATAACTTCTCTCAACAGGAGTAGTTTCCCAGAAGGTTTTATTTTTGGGACAGCATCATCAGCTTACCAGTATGAAGGTGCAGCAAATGTTGGTGGCAGAGGACCAAGTATATGGGATGCTTACACTCGTAATTATCCAGTACTAGCAGCAATTAAGATGAAACTAACAACATACACCAAGACATCAGAAGTTGTTATGTCTGCATCTCAAAAGGGTTCAATAGGGGTATCACTACCATGTCACTGGATGGAGCCACTCTATGATACAGAATTGGATCACCGTGCTGCACAAAGAGCCATTGATTTCATGCTTGGATGGTTTATGNAGCCACTGACAATAGGAGATTACCCAAGTTCTATGAGGTCTTTGGTAGGAAGCAGATTACCAAAGTTCTCAACATATCAAGTCAAACTTTTAAGAGGGTCCTTTGATTTTATTGGATTAAACTATTACACTTCCTATTATGCTNCTGATGCACCTGAATTAATTGAAGCCAGGCCTAGCTTACTNACAGATTCTCTTGTTATTCTTACAACGGAACGTGATGGAACACCTATTGGCCCTACGACTTCTTCANTGTGGATGTCAGTTTATCCAAAGGGAATTCGTAAAATATTGCTCTATATTAAAACAAAGTACAACAACCCTTTGATCTACATTACTGAAAATGGGATGGTGTGAATGTAAAAGGATTTTTTGCATGGTCATTGATGGACAACTTCGAATGGACTTTAGGCTACATAGTGAGGACCGGAATAAACTTGGTGGACTACAAAAATGGCCTCAAAAGATATCCAAAAATGTCAGCCATNTGGTTTAGGAATTTCCTACAACACAAAAATAGTTACATATCGGGATTTGTGCTAAGAAGGTGAACTTCATTAATTATTTGTGGNTTAAATAAATAAATATCATTGCAATAAGCAATATTATTGCTCAGTGGTCTAAGGGTATGTTTGGATTGGTTTATGCATAGNTTGTCTACTAACATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00289	108695	114462	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01188	E3.2.1.21	EC:3.2.1.21	Starch and sucrose metabolism	map00500
			Cyanoamino acid metabolism	map00460
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000289s00018723.1	PF00232.13	Glyco_hydro_1	41	79	1.70E-12
Glyur000289s00018723.1	PF00232.13	Glyco_hydro_1	90	260	1.40E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.437
SRR1783600	control	17.694
SRR1783602	moderate drought stress	16.151
SRR1811619	moderate drought stress	16.153

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.179
DRR006520	Root Summer glycyrrhizin high producing strain	5.833
DRR006521	Root Winter glycyrrhizin high producing strain	0.924
DRR006522	Root Winter glycyrrhizin high producing strain	1.211
DRR006523	Root Summer glycyrrhizin low producing strain	4.590
DRR006524	Root Summer glycyrrhizin low producing strain	4.616
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	71.430
SRR2868004	Drought Stress (root)	82.012
SRR2967015	Control (root)	119.416

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.367
SRR9715740	Leaf	0.264
SRR9715741	Leaf	0.530
SRR9715739	Root	3.319
SRR9715742	Root	11.971
SRR9715743	Root	10.902

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.368
SRR8749028	MeJA induced 9h	21.987
SRR8749029	MeJA induced 9h	18.944
SRR8749030	Uninduced	29.966
SRR8749031	Uninduced	39.793
SRR8749032	Uninduced	35.769

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.245
SRR8400027	Control - Root	34.747