Gene detail

Gene detail information of Glyur000289s00018701

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01260.1	3.00E-14	Protein of unknown function (DUF789)
NR	KHM99727.1	0	DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Glycine soja]
trEMBL	tr\|K7LEA2\|K7LEA2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G29401.2}

Sequence

Transcript Sequence

>Glyur000289s00018701.1
ATGTTTCTTCTATGGACAGGAAAGGAAGATGCATTGTGCCTTTCAAGAAAAAGGTGTGCCATCCTTACATTTCTTAACTTTGAGCCTGATGGAACCTGGAGAATTGTTGCTCTTCCAGTGCAGTGTCTCAATCACATTAACCTAGCTTCTGGCATAAATATGGATGGTCTGCAACTTCTTTTCCCTCCACCCCTTAATAGATTGAAGATTGATCAATGTAAGGGGCCTAGAGGACCTTTGCCTCCCTGTGCTTATTCGGTCAAATCATTTTCCAGAAGAGGCTTTACCGGTTCAAACGTGCGTCGCCGGTGTCAAAACAAAATCGCTAACAAAGCTTCTAAACTGAACGAACTTCCTGGGAACTCTTGTTCACGAGGTTCGTTAGTCAGCAGCCCTAGCTTGTTCCCTCATGGTTCTGCTGCAGTTAATTCATCCGATAAGTTCACGAGTAATACCAAGGAAGACAAGTCTCTGAAGAAAAGCTCGAGAAAAAGGATGAGAAAGAAGGTTAGGCAGAGTAAGAAGCAGCCAAGTAACAGTGGTTCTACTGAACGAGTTCATACCGAGGAATATGTCTGTGTAAGTTTGAGTTCTGAAACCTGCAGCAGCAATGATGCGGGCAAGGAGGTTGGGCTGATGCATACAACTGCACCTGATTTTTCGTCTTCTGATGATAGACTAACAAAAATTGATTGTAAAAGAAATGAGATGAATGAAAACACATATGTTAAAGAAGCGCCAAAAAGTTGCGACTCCTGTATTGATGAAGAAGTGATGTCAAAAGCTACTGCACCTGTTATTCAGAATTCTTCTGGAGAATGTGCCACTTTTGAATCCAAGTATCAGCTGCAAGATAGGAATCCTGATTTCACAGTCATTGATAGAGAAACAAAGGACACTCAACACGTCGAGTTATGCTGTTTTAATGATATACAAGACTCTTTGGTGTTGGATTCAGTTTCGATTGGTTCAAAAAGTGATGAAAGTACCAATGGTGGTGATATAGGAAGGCAGTCCAACAAGGGAAGTTGCGGAATCACTTCAAATTCGGGAGATGGGTATTTTCTGGATCAGAACTTAGTGAATGGCATTCGCAATAACTGTGAACATAATGAGGGAATGAGGCATGGTGGTCAAAATTGCATTGGCAGTGATAAGAGAGTTAAACAAAAGAGAACAATGTCGAAGAGTTCAAGTTTCAATAAATTTGGGGGTGCTAGCATTTTGCATGGTCGAACAGGGAAGGAAAACAGCCATTCTGTCTGGCAAAAGGTTCAGAAGAACAGTTCCGATGAATGTGGTGGTGATGTGAAGAAAGCAACGGAAAAGGATCCTTCAGCTATCAAAAATTGCAATTCTGCTAATGTAAATGCTGTATCAAAACCAGAGGACAAAAAACAGCTAAAAAATAAAGTTGGTAGAAAATCAAAAGGTAAAATGGAGTCAGTTCCAAAAAAGGGACACTGCAGTTATTCTAGGAAGGGTTCCCATTTTAACAAGACTGTGTTAAATGATAACGTGAAGGGTAGTATTCAACAAAGTGATTCGTCAAATACCGCGTCTCAGGAAATTAATCAAGGATTAAGCAGTGTCTCTGATATTAATTGCCTGATGGCTGAGTTCCAGAGAAATGGAGTTGAACAGGAAGCATCTGAAATAATTCACAGTGCACAATTCCATCCGCAGGAGTCAGATATCCAGAAAAGTGCCTGCCATGGTATCGCAAACANGAAGAATGAAAACATAGACATTCAAGATAGCTCATTGGTAGTGCCAGGTGAGAACACCAATCAATCAAATATGTCTGATGAGCAATCTCATGTTTCTTTTAATCTTTTAGATGATGAAGTTGGTCAAACAGTGAAAGAAGTTTCTTCTGCAGATTACAATGCACAGAACCAAAGTTCCGGATCATCTACCCTATGGAAATGGATACCAATTGGGAAAAAGGATGCAGGGTTGGCAAAATCTGAATCTAGTAATTCATCATCAGAATATTCAGATGAACTACCTAGTAAAAATTTCAACTTGGAAAACAGTCTTGAACCAAAAGTGGCTTCCTTTTCTCAGAATCAGGATCCTTCACCAATTGCAAGCACCACATGCATGNATCAGATTTACAATAAAGCTTCTTGTCTAGATGAGGGCGAGAATCATAAATTGGGTAGTGAGATTGCATGTACATTGACAGAGAATAGGGACAAGCTTGAAGTAGCTAATCACATGATTTATGAATGTGAGAATCAAGATATGTTGGAAAATGATTCCTATAGAATAGCTCAAGCTGTGAGTGATGCCTGTAGAGCTCAACTTGCTTGCAAAGCTGTACACATGGCCACAGGTGGTCCGGTTGCAGAGTTTGAAAGACTACTACATTTTTGTAGTCCTGTTATTTGTCAATCACCCAATTCACTCAGTTGTTTGACCTGCTCAGAAGATCATTCCGGTGGCATCTCGCTGTGCAGACACGAGATGCCTGCCCTATCTTTGGGATGCCTGTGGCAGTGGTATGAGAAACATGGGAGCTATGGGTTAGAGATAAGGGCTCAGGATTATGAAAATCCAAAGAGACTGGGTCATGTTGGTCATTTTCCATTCCGTGCCTATTTTGTCCCGTCTTTATCAGCAGTTCAGCTGTTTAAGAACCGTGAAAACCGACGTGTAAACAACAGTGAGGAGTTTCCAAATTGTAAGGCTTCAGAGGCATGTGAAATGGTTGACATTTCAGAAGAGTCATCTCCTGCCTGTCAACATTCAATATCTTCTGTTCTCTGTCCCCAGCCTCGCAATCAGGATGCTAGCATTCAAATACCAAAGAAGACGGCTTCTATCAATAATGCATCTGATCCATCTACCGACTCAAACTGCCCTGATGATTTAGAACTTCTTTTTGAATATTTTGAATGTGAACAACCTCAACAAAGACGGCCTCTATATGAGAAGATACAAGAGCTGGTTAGAGGCGATATACCAATCCAGTCCAAAGCTTATGGGGACCCAACAAAACTGGATTCAATAAACCTGCGAGATCTTCACCCTAGATCTTGGTACTCAGTTGCATGGTATCCTATTTACCGTATACCAGATGGCAACTTTCGTGCAGCTTTTCTGACTTACCATTCACTTGGACATTTGGTTCGTAGAAGTGTATATTCGGATTTGCCAACTGTAGATTCTTGCATAGTATCTCCAGCTGTAGGTCTTCAAAGTTACAATGCCCAGGGTGAATGCTGGTTCCAGCTGAGTCATTCTGCAATGGCAGCGGAAATGCTGGGCATAAACCCGTCTATACTTCTTAAAGAGCGGCTGCGGACACTCGAGGAAACAGCATCTCTCATGGCAAGAGCTGTCGTCAACAAGGGGAACCAAATCTGCACAAACAAACATCCAGATTACGAGTTTTTCTTGTCTAGGCGACGGTATTGAGATTTCAAAAAATTTCACAATAAATAATTATGAGTATAGGCGAACTAGTAGTCACTAATAATTTTGGCTACATTCAGATGTAGGACATTATGTCTCAATTAGGATCCAATTGAAGTGTGATTGGTGGTATTGCATGTGTTTTTTAGGTCCCCTATAGTTGAACTTAAATTCATTTGTACATAGCTTTGTGCAATACCATTCTTTTCTTCTGCCATTTTTACTACTCTCTTTCAATTTTAGCTCATTTTTGTTCCTTGGTAGAAAGAAATAAGGAATATGTAGTGAGTGCTGATGTTGAGAGATTAATTAGCAGTAATTTCTGGACATCATGATTCTTGTTTTTCCATAGC

Protein Sequence

>Glyur000289s00018701.1
MFLLWTGKEDALCLSRKRCAILTFLNFEPDGTWRIVALPVQCLNHINLASGINMDGLQLLFPPPLNRLKIDQCKGPRGPLPPCAYSVKSFSRRGFTGSNVRRRCQNKIANKASKLNELPGNSCSRGSLVSSPSLFPHGSAAVNSSDKFTSNTKEDKSLKKSSRKRMRKKVRQSKKQPSNSGSTERVHTEEYVCVSLSSETCSSNDAGKEVGLMHTTAPDFSSSDDRLTKIDCKRNEMNENTYVKEAPKSCDSCIDEEVMSKATAPVIQNSSGECATFESKYQLQDRNPDFTVIDRETKDTQHVELCCFNDIQDSLVLDSVSIGSKSDESTNGGDIGRQSNKGSCGITSNSGDGYFLDQNLVNGIRNNCEHNEGMRHGGQNCIGSDKRVKQKRTMSKSSSFNKFGGASILHGRTGKENSHSVWQKVQKNSSDECGGDVKKATEKDPSAIKNCNSANVNAVSKPEDKKQLKNKVGRKSKGKMESVPKKGHCSYSRKGSHFNKTVLNDNVKGSIQQSDSSNTASQEINQGLSSVSDINCLMAEFQRNGVEQEASEIIHSAQFHPQESDIQKSACHGIANXKNENIDIQDSSLVVPGENTNQSNMSDEQSHVSFNLLDDEVGQTVKEVSSADYNAQNQSSGSSTLWKWIPIGKKDAGLAKSESSNSSSEYSDELPSKNFNLENSLEPKVASFSQNQDPSPIASTTCMXQIYNKASCLDEGENHKLGSEIACTLTENRDKLEVANHMIYECENQDMLENDSYRIAQAVSDACRAQLACKAVHMATGGPVAEFERLLHFCSPVICQSPNSLSCLTCSEDHSGGISLCRHEMPALSLGCLWQWYEKHGSYGLEIRAQDYENPKRLGHVGHFPFRAYFVPSLSAVQLFKNRENRRVNNSEEFPNCKASEACEMVDISEESSPACQHSISSVLCPQPRNQDASIQIPKKTASINNASDPSTDSNCPDDLELLFEYFECEQPQQRRPLYEKIQELVRGDIPIQSKAYGDPTKLDSINLRDLHPRSWYSVAWYPIYRIPDGNFRAAFLTYHSLGHLVRRSVYSDLPTVDSCIVSPAVGLQSYNAQGECWFQLSHSAMAAEMLGINPSILLKERLRTLEETASLMARAVVNKGNQICTNKHPDYEFFLSRRRY

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00289	14534	20123	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000289s00018701.1	PF05623.7	DUF789	785	1135	5.00E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.555
SRR1783600	control	2.614
SRR1783602	moderate drought stress	2.159
SRR1811619	moderate drought stress	1.945

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.371
DRR006520	Root Summer glycyrrhizin high producing strain	4.345
DRR006521	Root Winter glycyrrhizin high producing strain	2.128
DRR006522	Root Winter glycyrrhizin high producing strain	2.044
DRR006523	Root Summer glycyrrhizin low producing strain	2.873
DRR006524	Root Summer glycyrrhizin low producing strain	2.773
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.447
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.443

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.656
SRR2868004	Drought Stress (root)	13.370
SRR2967015	Control (root)	11.406

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.373
SRR9715740	Leaf	0.988
SRR9715741	Leaf	1.108
SRR9715739	Root	1.125
SRR9715742	Root	2.703
SRR9715743	Root	2.287

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.085
SRR8749028	MeJA induced 9h	2.878
SRR8749029	MeJA induced 9h	1.651
SRR8749030	Uninduced	0.880
SRR8749031	Uninduced	0.285
SRR8749032	Uninduced	0.468

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.036
SRR8400027	Control - Root	12.416