Gene detail

Gene detail information of Glyur000289s00018700

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G17650.1	0	YELLOW STRIPE like 5
NR	XP_004515282.1	0	PREDICTED: probable metal-nicotianamine transporter YSL5-like [Cicer arietinum]
COG	YP_004271220.1	2.00E-37	oligopeptide transporter [Planctomyces brasiliensis DSM 5305]
Swissprot	tr\|Q9SHY2\|YSL7_ARATH	0	Probable metal-nicotianamine transporter YSL7
trEMBL	tr\|G7KKB8\|G7KKB8_MEDTR	0	OPT family oligopeptide transporter {ECO:0000313\|EMBL:AES76372.1}

Sequence

Transcript Sequence

>Glyur000289s00018700.1
ATGGCCCAAAATGAAAATGAGGATAGGGTAGTGGACAATGGTTTTGGTCATGAAGATTATGATGATGATGAACACAAGGGAACCAGAAAGGTGAAGGAGGAAGAAGAGGGTGCTGCTTCTGTGGAGAAGGTGTTTCAGCACTTATTGGTGCCATCATGGAGGAACCAGTTAACTGTGAGAGCCTTTGTGGTGAGTTTTTTTCTGAGCATACTCTTCAGTTTCATTGTGATGAAGCTCAACCTCACCACTGGTATCATACCTTCCCTCAATGTCTCTGCTGGACTTCTGGGGTTCTTCTTTGTGAAAACTTGGACCAAATTCTTGGAAAAATCTGACATGTTGAAGCAACCCTTTACAAGGCAAGAGAACACTGTCATCCAGACCTGTGTTGTTGCCTCCTCTGGCATAGCCTTTAGTGGAGGATTTGGGAGTTACCTCTTTGGAATGAGTGAACGTGTAGCCAATCAATCCTCAGACACCAGTGATTTTAAGGACCCAAAATTGGGGTGGATAATTGCTTTTCTCTTTGTTGTTAGCTTTCTTGGCCTCTTCTCAGTTGTACCTCTGAGAAAGATTATGGTTATTGACTTCAAGTTGACATATCCAAGTGGTACTGCAACTGCTCATCTCATCAACAGCTTCCACACTCCTCAGGGAGCCAAACTAGCAAAGAAGCAAGTGAAAGTGTTGGGAAAATTCTTCAGTTTCAGTTTCCTATGGGGTTTCTTTCAATGGTTCTATACAGCTACTGATCAGTTTTATTTTGATTTTTCTGCACTCTATGTTGGAGTGGGAATGATTTGCCCATATATCATAAACATATCAGTGCTCCTTGGTGGAATTCTTTCTTGGGGAGTAATGTGGCCTCTTATAGAAACCAGAGAGGGTCATTGGTACAATGCAGGCCTTGGTGACAGCAACCTTCATGGCATCCAAGGTTATAGGGTATTCATAGCCATAGCCATGATCTTGGGAGATGGTTTATACAACTTTGTGAAGGTGCTAACGCGTACCTTATTGGGNTTGTTCTATCAAATCCGGCACAAACAACGGGAGAATGTTCTTCCTGTTGCTGCTGATCAAGACTCTCCCCNAAGCAGCACTCAGAAATCTTACGACNATCAGCGCCGCACGCAANTCTTCCTTAAGGATCAGATCCCCACATGGNTTGCAGTTGGAGGCTATGTTGCTATTGCTGCCATATCTGCAGCCACTCTTCCACACATCATCACCCAACTGAAGTGGTACTACATACTTGTTATCTACCTAATTGCTCCAACCTTAGCATTTTGCAATGCTTATGGTTGTGGACTAACAGACTGGTCCCTAGCATCTACCTATGGAAAGCTTGCCATCTTCACAATTGGAGCATGGGCTGGCGCATCTCATGGCGGGGTTATTGCTAGTCTAGCAGCCTGTGGAGTGATGATGAACATTGTTTCCACGGCTTCCGACCTTATGCAGGACTTTAAGACCGGATACCTCACCCTCGCTTCGCCGCGCTCCATGTTTGTGAGCCAAATAATTGGCACAACAATGGGTTGTGTGATTTCCCCATGTGTCTTTTGGATCTTCTACAAGGCCTTTCCTGACCTTGGGACACATAAAAGTGAATACCCTGCCCCATATGCGATTGTGTACCGCAACATGGCGATATTAGGTGTACAAGGCTTTGATTCTCTACCAAAGAACTGCCTCTTGCTTTGTTATATATTCTTCGGTACTGCAATCGTGGTAAACTCGATTAAGGATTTCATGGGTAAGAGAGGGAGGTTCATACCACTACCAATGGCTATGGCTATACCTTTCTATTTAGGACCTTACTTTGCCATTGACATGTGTGTTGGAAGTTTGATATTGTTTGTGTGGGAAAAGATTAACAAGGCCAAGGCAGATGCTTTTGCACCAGCTGTGGCTTCTGGTTTGATATGTGGGGATGGAATATGGACTCTTCCTGCTTCAATACTTGCTCTTATTGGAGTTAAGCCACCAATTTGCATGAAGTTCTTGTCAAGAGCCACAAATGATAGGGTTGATGCTTTCTTAGGGAATTAAGAGTCAAGTTTTGAATTGTGCTTGCTTGGTATATTGTGAAAGTTTGAAAAGCTTTGCTGCTGACTTGTAAATCTGTCAAATATCATTCAAGTTTGCAGTTAGCTAGCCATATAGTTGAACAAATCACAGTGAAAAAAGAGCATTATGTATGTTATATCAGATATATTAGAAAGAAAGCGTATGTTTGTATTATCATTTTTGGGGCTCCTAAAACATCTTCATTTCAAATATGCTTCCTCTAAACATGCCATGTTTTTCAATATGTTCCTAAGACAGTTGATGGAAATTATTTATTGAATTTGTAGTAAGGGCCATTAAGTGATGACTTTTCTGGGTGATGAGTTTTTTTCTTCCTTTTTTTTCAACTAATGAATTGTAGGGTAATAAGAAGCAGAAAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00289	560	5202	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000289s00018700.1	PF03169.10	OPT	56	656	3.40E-139

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.223
SRR1783600	control	5.188
SRR1783602	moderate drought stress	6.372
SRR1811619	moderate drought stress	6.246

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.605
DRR006520	Root Summer glycyrrhizin high producing strain	2.711
DRR006521	Root Winter glycyrrhizin high producing strain	1.724
DRR006522	Root Winter glycyrrhizin high producing strain	1.588
DRR006523	Root Summer glycyrrhizin low producing strain	2.118
DRR006524	Root Summer glycyrrhizin low producing strain	1.826
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.796
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.390

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.054
SRR2868004	Drought Stress (root)	37.152
SRR2967015	Control (root)	57.384

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.594
SRR9715740	Leaf	29.786
SRR9715741	Leaf	38.559
SRR9715739	Root	9.993
SRR9715742	Root	8.807
SRR9715743	Root	8.888

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.412
SRR8749028	MeJA induced 9h	1.526
SRR8749029	MeJA induced 9h	0.979
SRR8749030	Uninduced	0.190
SRR8749031	Uninduced	0.062
SRR8749032	Uninduced	0.012

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.733
SRR8400027	Control - Root	12.339