Gene detail information of Glyur000288s00019882 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G27760.1 | 1.00E-09 | Hypoxia-responsive family protein |
| NR | AFK37717.1 | 3.16E-49 | unknown [Lotus japonicus] |
| trEMBL | tr|I3SBS5|I3SBS5_LOTJA | 1.00E-49 | Uncharacterized protein {ECO:0000313|EMBL:AFK37717.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00288 | 173752 | 174998 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000288s00019882.1 | PF04588.8 | HIG_1_N | 9 | 59 | 1.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.815 |
| SRR1783600 | control | 0.788 |
| SRR1783602 | moderate drought stress | 1.030 |
| SRR1811619 | moderate drought stress | 0.964 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.221 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.961 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 251.233 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 246.848 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 60.361 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 60.444 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.450 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.654 |
| SRR2868004 | Drought Stress (root) | 0.671 |
| SRR2967015 | Control (root) | 0.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.226 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.063 |
| SRR9715739 | Root | 0.195 |
| SRR9715742 | Root | 0.477 |
| SRR9715743 | Root | 1.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 70.766 |
| SRR8749028 | MeJA induced 9h | 156.187 |
| SRR8749029 | MeJA induced 9h | 201.136 |
| SRR8749030 | Uninduced | 128.729 |
| SRR8749031 | Uninduced | 111.880 |
| SRR8749032 | Uninduced | 290.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.415 |
| SRR8400027 | Control - Root | 13.248 |