Gene detail

Gene detail information of Glyur000288s00019877

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G49570.1	2.00E-34	Peroxidase superfamily protein
NR	XP_003601028.1	1.12E-136	Peroxidase [Medicago truncatula]
Swissprot	tr\|P15233\|PER1C_ARMRU	8.00E-61	Peroxidase C1C (Precursor; Fragment)
trEMBL	tr\|G7J2Y6\|G7J2Y6_MEDTR	4.00E-137	Peroxidase family protein {ECO:0000313\|EMBL:AES71279.1}

Sequence

Transcript Sequence

>Glyur000288s00019877.1
AATTGATTAACCAATTCTATCCTTTCTCGTTATTATAAGAGATTATAAGAGAAGCCACCAATTATTTAGTTTTAGTGCACTGTGTGAAAGCTTGTATGGCTTCTCACTACTTCCTCTTGCTCGTTCTTGTTGCTGCTTCTGCACTTTCTGANGAAGCAGATGCCAAAAAGAAGTTATCTACAGACTTCTACTGTAGCAGCTGCCCGGAACTGTTGCCTATAGTGAACAAAGGAGTCATAAAAGCCATTAAAAACGAAACTCGCATAGGGGCTTCCTTACTTCGACTGCATTTNCATGACTGCTTTGTAAATGGTTGTGANGCATCAATACTGTTGGATGATACGAGCAGTTTCATTGGGGAAAAAACTGCAGCAGCTAANAATAATTCAGCTAGAGGATTCAACGTTATTGATGACATCAAAGCCAAGGTGGAGAAAGCTTGCCCAAGGGTTGTGTCCTCTAGGGGGGCCATCGTGGAAAGTGCACATACTATTGGCCTGGCTAGATGCGTACAATTCCGAGCACACATCTACAATGATTCCAACATTGATGCNTCCTTTGCCAAGTCTCTACAGAGCAAGTGCCCCAGAAGTGGAAATGACGATGTACTAGCACCCCTTGACCATCAAACTCCTACCCATTTCGATAATCTATACTTCAAGAACTTACTTGACAAAAAGGCTCTTCTCCATTCCGACCAGGAGCTGTTCAATGGCAGTNCTTCAACTGATCAACTGGTGAAGAAATATGCTACTAACCCTGCTGCATTTTTTAAAGCATTTGCTAAGGGCATGTTCAAAATGAGCAAGATCAAGCCTCTCACAGGAAGCAAAGGGCAGATCAGAACCAATTGCAGAAAAGTCAATTAAAAATTAGTGAGTGATAATGTGTTTAGTATACATGTACATGTAATTATCCATCGATCCATCTTTCTTTCCAAAACTATATCCAATAATTTGATTCTCCAGCTGTCAAGCAACCTTGTTCACCATCAATAAACTACCTTGTTTTATATGTCTATGCACATAAATCATAAAGTGCCAAGCTTCTCATTACCCCTTCTAATATATCGATCAACAAAACATGCAAGACATATCTCAGAGTCATAACTTGAAAATCTTCTTATTAATGCCANTGGCCAAATCTGTTCACATAGTTTCATTATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00288	158271	160381	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00430	E1.11.1.7	EC:1.11.1.7	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function

GO:0004601 peroxidase activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000288s00019877.1	PF00141.18	peroxidase	45	121	1.90E-18
Glyur000288s00019877.1	PF00141.18	peroxidase	129	221	1.80E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	89.587
SRR1783600	control	88.758
SRR1783602	moderate drought stress	60.843
SRR1811619	moderate drought stress	61.498

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	130.031
DRR006520	Root Summer glycyrrhizin high producing strain	128.109
DRR006521	Root Winter glycyrrhizin high producing strain	0.394
DRR006522	Root Winter glycyrrhizin high producing strain	0.343
DRR006523	Root Summer glycyrrhizin low producing strain	34.523
DRR006524	Root Summer glycyrrhizin low producing strain	34.964
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.347
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.215

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.489
SRR2868004	Drought Stress (root)	5.098
SRR2967015	Control (root)	5.500

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.168
SRR9715740	Leaf	2.516
SRR9715741	Leaf	2.901
SRR9715739	Root	10.316
SRR9715742	Root	34.009
SRR9715743	Root	29.677

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.058
SRR8749028	MeJA induced 9h	0.191
SRR8749029	MeJA induced 9h	0.208
SRR8749030	Uninduced	0.106
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.043

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	137.067
SRR8400027	Control - Root	144.210