Gene detail

Gene detail information of Glyur000288s00019876

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40460.1	0	Major facilitator superfamily protein
NR	XP_003552142.1	0	PREDICTED: probable peptide/nitrate transporter At2g40460-like [Glycine max]
COG	YP_002494545.1	4.00E-29	amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1]
Swissprot	tr\|Q8VZR7\|PTR30_ARATH	0	Protein NRT1/ PTR FAMILY 5.1
trEMBL	tr\|I1MYX1\|I1MYX1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G02510.1}

Sequence

Transcript Sequence

>Glyur000288s00019876.1
CTCTTTCTCAGTTAATTGCTTTCCTTGATACATCACTAGCTAGCTAGCTAGCTAGCTCTTATTTTCGTTATCCTTTTTAAGTTTTTATCCCTCCCTCCCCACTATATAATAATAATAATAATAATATATCTCTCTAATGGAAGCCAAAACAGATTATACCCAAGATGGCACTGTTGATTTCCGTGGCCAGCCTGCACTTCCATCCAAAACCGGCAAATGGAAGGCTTGCGCTTTTCTTGTTGGGTATGAAGCATTTGAAAGGATGGCCTTCTATGGAGTTGCATCCAACTTGGTGAATTACCTTACAACCCAACTTCATGAAGACACTGTTTCATCAGTGAGGAATGTGAACAACTGGTCAGGATCTGTGTGGATAACACCAATTCTTGGGGCTTACATAGCAGATTCTTACTTGGGTCGCTTCTGGACTTTCACCCTCTCATCTCTCATTTATGTCTTGGGGATGACACTTCTCACAATAGCCGTGTCACTCAAGAGCTTGAGGCCAGCATGCACCAACGGCATATGCAACAAAGCATCTTCCTCACAAATTGCATTTTTCTACACAGCACTCTACACNATGGCAATAGGGGCAGGGGGAACAAAACCCAACATCTCAACCTTTGGTGCTGACCAATTCGATGACTTCAACCCAAATGAGAAAGAGCTAAAGGCATCCTTCTTCAACTGGTGGATGTTCACATCATTCTTAGGTGCCCTTATTGCCACTTTAGGCCTTGTCTACATTCAAGAGAACTTGGGATGGGGACTTGGTTATGGAATCCCCACTGCTGGTCTTCTATTGTCACTAGTCATTTTCTATATAGGGACACCAATTTATCGTCACAAAGTTAGGACCACAAAAAGCCCTGCTAGTGACCTTATTCGTGTCCCTATTGCAGCCTTCAAGAATAGAAAACTCCAACTCCCTAGTAGCCCCTCGGATCTGTTTGAGCATCAGCTTCAACATTATGTTAGTAGTGGAAAACGGCAGGTGTATCACACTCCTGCTTTGAGGTTTTTGGACAAGGCTGCTATCAAAGAAGACACTACTACTGGTTCTTCAAGAGTACCAATGACGGTAACCCAAGTGGAAGGAGCTAAGCTTATCTTTGGTATGGTCCTTATATGGCTAGTAACACTTATCCCCAGCACCATTTGGGCACAAATCAACACTCTTTTTGTGAAACAAGGAACCACCTTGGAAAGAAACTTGGGTCCTGATTTCAAAATCCCAGCAGCTTCTCTCGGGAGCTTCGTGACCCTCTCCATGTTACTCTCTGTGCCAATGTACGACCGGCTTTTCGTGCCCTTCATGCGCCAGAAAACCGGCCACCCCAGAGGAATCACATTGCTCCAAAGGCTTGGAATTGGATTTTCAATCCAGATCATAGCCATTGCAATTGCCTATGCAGTTGAGGTTAGAAGAATGCATGTCATAAAAGCAAGCCACATAGTTAGTCCTAAAGAAATTGTCCCTATGAGTATATTCTGGTTGTTGCCTCAGTATGTTCTGATTGGGATAGCAGATGTGTTCAATGCCATTGGATTGCTTGAATTCTTCTATGATCAATCCCCTGATGACATGCAGAGTCTTGGAACAACTTTCTTCACAAGTGGGATTGGTGTTGGGAACTTTTTGAACAGCTTTCTGGTGACAATGGTTGATAAGATAACAGGAATGGGTGAGAGGAAGAGCTGGATTGGTGACAACTTGAATGACTGCCACCTTGATTACTATTATGGGTTCCTGTTGGTCATGTCAAGTGTCAACTTGTTGGTGTTTCTTTGGGCTTCAAGTAGATACATTTACAAGAGGGAGTCAATAAGGGTCAAAGAGGGCGCCCTTTGTGTCCAAATGGAGGGAAACCCAACTTTGGATGCCTCTCTTGGTTTACAAGTATGAAAGGGTATGTTTGCATTGCCGTTTGCAACGGAGTTTCACGAATTCCAAGGCACAAAANGCAAAAGACACAGATGTTTTGTGTCTTGGAATTGGTAAAATTCTGTTGGCGGCAACACAAGCTTGAAAACTAGCTTAGGACAAAAAAAAAAATAAAGTATGAAAACTAGCTAAAGGAGGGAGGGCGTTTTAAATAACCAGTGGTGATATTAAGTCTATACTTCNATTGCAGATTCTATGCCAAACTGATAAATGATTGTTATTTGAATTTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00288	115430	121482	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000288s00019876.1	PF00854.16	PTR2	96	493	6.90E-100

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.183
SRR1783600	control	0.194
SRR1783602	moderate drought stress	0.158
SRR1811619	moderate drought stress	0.166

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.130
DRR006520	Root Summer glycyrrhizin high producing strain	1.061
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.343
DRR006524	Root Summer glycyrrhizin low producing strain	2.466
DRR006525	Leaf Summer glycyrrhizin high producing strain	51.550
DRR006526	Leaf Summer glycyrrhizin high producing strain	51.297

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.925
SRR2868004	Drought Stress (root)	1.033
SRR2967015	Control (root)	1.512

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.397
SRR9715740	Leaf	20.645
SRR9715741	Leaf	17.359
SRR9715739	Root	0.023
SRR9715742	Root	3.216
SRR9715743	Root	3.258

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.392
SRR8749028	MeJA induced 9h	0.015
SRR8749029	MeJA induced 9h	0.336
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.157
SRR8749032	Uninduced	0.949

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.791
SRR8400027	Control - Root	1.690