Gene detail

Gene detail information of Glyur000288s00019874.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58380.1	4.00E-152	SOS3-interacting protein 1
NR	XP_003538498.2	0	PREDICTED: CBL-interacting protein kinase 2-like isoformX1 [Glycine max]
COG	YP_823396.1	6.00E-34	serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076]
Swissprot	tr\|Q7X996\|CIPK2_ORYSJ	0	CBL-interacting protein kinase 2
trEMBL	tr\|K7LRS9\|K7LRS9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G35900.2}

Sequence

Transcript Sequence

>Glyur000288s00019874.1
ATGGAGAAAAAGGGGATTGTATTGATGCAGAAATATGAGTTTGGAAGACTATTAGGCCAAGGAAACTTTGCAAAGGTTTACCATGCAAGGGACCTCAGAAATGGTGACAATGTTGCTATTAAGGTTATTGACAAGGAGAAAGTCCTAAAAGTTGGTCTGGTTGATCAAACCAAGCGAGAGATTTCCGTTATGAGGATGGTTAAACACCCGAATGTTTTGCGGCTCTATGAGGTCTTGGCCACCAAAACCAAGATTTACTTCATCATAGAATATGCCAAAGGGGGTGAGCTTTTCAACAAGATAGCTAAAGGTAGACTTCACGAGGACGTGGCGAGGAAGTACTTTCAACAATTGATCAAAGCTGTTGATTTTTGCCACAGCCGGGGTGTCTATCACAGGGATTTGAAGCCGGAGAACTTGCTTCTGGATGAGAATGGGGTTCTTAAAGTAGCAGATTTTGGACTGAGCGCGCTCGTTGAATCTCATCGCGAAGACAGCATGCTGCATACAATTTGTGGAACTCCTGCATATGTAGCTCCTGAGGTTTTAAGTCGAAAGGGTTACGATGGAGCGAAAGCTGATGTTTGGTCTTGTGGAGTGATCTTATATGTTCTTTTGGCTGGTCATTTGCCTTTCTATGATTTGAATATTATGTCACTGTATCATAAAATAGGCAAGGCAGAATACAAATGCCCAAACTGGTTTTCATTTGAAGCGCGCAGGCTATTGGCGAGAATTCTAGACCCCGACCCAGATTCTAGGATATCGGCGGCGAAAGTTTTGGAATCTTCGTGGTGCAGAAAAGGACTCAATTCCAAATCTGTTCGAGTGAAAAGAGAGGTTACAAATGTGGCGGCTTCAGTTGATTCTGCTGAAGTTCTTGGTTTGTCTGAAAATGGAAGTGCTGCTGTTGAGGAACATCAAGCATTGGTTCAACCTACGCATTTAAATGCCTTTGATATACTTTCTCTGTCCGCCGGTCTTGACTTGTCTGGCCTTTTTGGAAGTAATGATGAAGAGGAAGATNTCAAATTTACGTCCATGAGCTCCGCCTCGTCTATCATGTCTACAATGGAGGATGTTGCTCGCATTCTGAGGATGACGATAACTAAGAAGAATGCGGGGTTGCTGAAATTNGAGAGATCCAGGGAAGGTAGAAAANGGCCACTTTCCATTGATGCTGAGATATTTGAGTTCGCCCCATCTTTCCATTTGGTCGAGATGAAGAGGTCCTGTGGTGATACATTGGAATACCAGAAGATATTGAAGGAGCAGATAAGACCAGCTCTCAAAGATATTGTCTGGATTTGGCAAGGTGAGCAGCAGCAGCAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00288	111429	112763	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0007165 signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000288s00019874.1	PF00069.20	Pkinase	12	265	1.90E-74
Glyur000288s00019874.1	PF03822.9	NAF	312	371	3.90E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.630
SRR1783600	control	0.577
SRR1783602	moderate drought stress	0.828
SRR1811619	moderate drought stress	0.766

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.988
DRR006520	Root Summer glycyrrhizin high producing strain	0.914
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.419
DRR006524	Root Summer glycyrrhizin low producing strain	1.429
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.274
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.299

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.987
SRR2868004	Drought Stress (root)	1.263
SRR2967015	Control (root)	0.839

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.343
SRR9715740	Leaf	0.252
SRR9715741	Leaf	0.662
SRR9715739	Root	0.236
SRR9715742	Root	1.670
SRR9715743	Root	1.549

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.456
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.112
SRR8749030	Uninduced	0.024
SRR8749031	Uninduced	0.114
SRR8749032	Uninduced	0.128

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.800
SRR8400027	Control - Root	1.060