Gene detail

Gene detail information of Glyur000288s00019872.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40490.1	2.00E-169	Uroporphyrinogen decarboxylase
NR	KHN31331.1	0	Uroporphyrinogen decarboxylase, chloroplastic [Glycine soja]
COG	YP_007162110.1	1.00E-153	uroporphyrinogen decarboxylase [Cyanobacterium aponinum PCC 10605]
Swissprot	tr\|Q42967\|DCUP_TOBAC	0	Uroporphyrinogen decarboxylase, chloroplastic (Precursor)
trEMBL	tr\|I1LMX6\|I1LMX6_SOYBN	0	Uroporphyrinogen decarboxylase {ECO:0000256\|RuleBase:RU000554}

Sequence

Transcript Sequence

>Glyur000288s00019872.2
AGTGCCCACAAGAATGGGTTGGCGATTGGTTGCGCGATTCCCCTTATCTTTTCCCTAGTTTGCCCATTACAGCAGCGTTGAACAACTAACTCTGCGAATTGCGAAACAGTGTCTGAAGCATTACAGCTTCAATTTCAAACATGTTGTGCGTCAACAATGCCTTCACCTCTTTCTTACCCTTTCCATCCAGGAAACCAAGTCTCGTTTTTCCCTCCAAATCCATTTCTTGCGCCCTCCCAGGAACAGTTGCTGAACCAAAAGCTACAAATACTGCTGAACCACTTTTGCTTAACGCAGTTCGTGGGATAGATGTTGAAAGACCCCCGGTTTGGCTAATGAGGCAAGCTGGGAGTTACCAAGCCATTTGTGAGAAATATCCTTCGTTCCGTGAAAGGTCTGAAAATGTTGATCTTGTGGTGGAAATTTCATTGCAACCATGGAATGTTTTCAAGCCTGATGGGGTGATTTTATTCTCAGACATTCTTACCCCACTTTCTGGAATGAACATACCCTTTGATATTGTGAAGGGTAAGGGTCCTGTCATATTTGATCCCATCAACACAGCAGCNCAGGTTGATCAAGTAAGGGAGTTTATTCCTGAAGAGTCAGTTCCATACGTTGGCGAAGCACTGACAATTTTGAGGAAAGAGGTGGATAATAAAGCTGCGGTCCTTGGTTTTGTCGGGGCCCCATTCACCCTGGCATCATATGTGGTTGAAGGTGGTTCATCAAAACACTTCTCAAAAATAAAGAGATTGGCTTTCTCTGAATCCAAGATCCTCCACTCGTTACTGCAGAAATTTGCAACGTCAATGGCAAGATACATTCAATACCAAGCTGACAATGGAGCTCAAGCTGTTCAGATCTTTGACTCATGGGCAACAGAGCTCAGTCCAGTTGACTTTGAAGAATTCAGTTTGCCTTACCTGAAGCAGATTATCGATACCGTAAAGAAGAGCCATCCAGAACTCCCTCTTATCCTCTATGCAAGTGGGTCTGGGGGATTGCTTGAGAGAATAGCTTTGACTGGTGTGGATGTAGTTAGCTTGGATTGGACGGTTGATATGGCTGATGGCAGGCGGAGACTGGGACCAAATATAGCTGTCCAGGGCAANGTGGACCCGGGTGTTCTTTTCGGTTCTAAAGAGCTCATCACNGATCGGATATATGATACTGTGAGGAAAGCAGGTAGAGGGAAACACATCTTGAATCTTGGTCATGGCATTGTAGTAGGTACACCTGAGGAGAATGTAGCACATTTTTTTGAGGTTGCCAAAGGAATCAGATACTAAGAAGCTAATTATGGTAAATTAATTTTTTGATTGATCACATTTTTATTCCTTCTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00288	103535	106944	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01599	hemE, UROD	EC:4.1.1.37	Porphyrin and chlorophyll metabolism	map00860
			Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process
GO:0006779 porphyrin-containing compound biosynthetic process

molecular_function
GO:0004853 uroporphyrinogen decarboxylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000288s00019872.2	PF01208.12	URO-D	46	379	1.00E-105

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.761
SRR1783600	control	17.075
SRR1783602	moderate drought stress	9.486
SRR1811619	moderate drought stress	9.266

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.726
DRR006520	Root Summer glycyrrhizin high producing strain	19.156
DRR006521	Root Winter glycyrrhizin high producing strain	11.267
DRR006522	Root Winter glycyrrhizin high producing strain	11.516
DRR006523	Root Summer glycyrrhizin low producing strain	17.708
DRR006524	Root Summer glycyrrhizin low producing strain	17.524
DRR006525	Leaf Summer glycyrrhizin high producing strain	101.647
DRR006526	Leaf Summer glycyrrhizin high producing strain	100.967

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.704
SRR2868004	Drought Stress (root)	30.944
SRR2967015	Control (root)	25.379

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	124.152
SRR9715740	Leaf	125.798
SRR9715741	Leaf	117.691
SRR9715739	Root	5.333
SRR9715742	Root	15.635
SRR9715743	Root	12.698

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.545
SRR8749028	MeJA induced 9h	48.557
SRR8749029	MeJA induced 9h	45.205
SRR8749030	Uninduced	64.663
SRR8749031	Uninduced	66.564
SRR8749032	Uninduced	57.837

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.019
SRR8400027	Control - Root	31.522