Gene detail information of Glyur000288s00019866 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G10970.1 | 4.00E-155 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| NR | KHN04810.1 | 0 | Phosphorylated carbohydrates phosphatase [Glycine soja] |
| COG | YP_001938722.1 | 6.00E-25 | phosphatase/phosphohexomutase HAD superfamily [Methylacidiphilum infernorum V4] |
| trEMBL | tr|I1LMX7|I1LMX7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G35920.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00288 | 86900 | 92928 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000288s00019866.1 | PF13419.1 | HAD_2 | 128 | 305 | 6.30E-14 |
| Glyur000288s00019866.2 | PF13419.1 | HAD_2 | 128 | 305 | 6.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.146 |
| SRR1783600 | control | 11.081 |
| SRR1783602 | moderate drought stress | 16.979 |
| SRR1811619 | moderate drought stress | 16.459 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.565 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.276 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.887 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 37.212 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.675 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.984 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 39.083 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.262 |
| SRR2868004 | Drought Stress (root) | 14.973 |
| SRR2967015 | Control (root) | 14.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 42.655 |
| SRR9715740 | Leaf | 51.433 |
| SRR9715741 | Leaf | 47.682 |
| SRR9715739 | Root | 7.270 |
| SRR9715742 | Root | 9.111 |
| SRR9715743 | Root | 11.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.970 |
| SRR8749028 | MeJA induced 9h | 61.475 |
| SRR8749029 | MeJA induced 9h | 78.348 |
| SRR8749030 | Uninduced | 76.877 |
| SRR8749031 | Uninduced | 110.425 |
| SRR8749032 | Uninduced | 142.535 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.765 |
| SRR8400027 | Control - Root | 16.768 |