Gene detail information of Glyur000287s00022148 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | AFN88207.1 | 3.08E-84 | integrase core domain containing protein [Phaseolus vulgaris] |
| trEMBL | tr|I6ZTT9|I6ZTT9_PHAVU | 1.00E-84 | Integrase core domain containing protein {ECO:0000313|EMBL:AFN88207.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00287 | 137166 | 137756 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000287s00022148.1 | PF14244.1 | UBN2_3 | 20 | 123 | 6.70E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.062 |
| SRR1783600 | control | 0.062 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.952 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.801 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.022 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.813 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.121 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.184 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.155 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.402 |
| SRR2868004 | Drought Stress (root) | 3.658 |
| SRR2967015 | Control (root) | 2.855 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 2.109 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 1.358 |
| SRR9715742 | Root | 0.003 |
| SRR9715743 | Root | 0.556 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.138 |
| SRR8749028 | MeJA induced 9h | 14.608 |
| SRR8749029 | MeJA induced 9h | 7.201 |
| SRR8749030 | Uninduced | 6.875 |
| SRR8749031 | Uninduced | 11.570 |
| SRR8749032 | Uninduced | 10.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.850 |
| SRR8400027 | Control - Root | 0.712 |