Gene detail information of Glyur000287s00022144 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48970.1 | 6.00E-49 | Heavy metal transport/detoxification superfamily protein |
| NR | KEH26130.1 | 5.38E-83 | heavy metal transport/detoxification superfamily protein [Medicago truncatula] |
| Swissprot | tr|Q9SZN7|HIP26_ARATH | 1.00E-17 | Heavy metal-associated isoprenylated plant protein 26 (Precursor) |
| trEMBL | tr|A0A072UJW0|A0A072UJW0_MEDTR | 2.00E-83 | Heavy metal transport/detoxification superfamily protein {ECO:0000313|EMBL:KEH26130.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00287 | 101203 | 102562 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000287s00022144.1 | PF00403.21 | HMA | 4 | 61 | 2.60E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.904 |
| SRR1783600 | control | 0.969 |
| SRR1783602 | moderate drought stress | 0.772 |
| SRR1811619 | moderate drought stress | 0.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.336 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.157 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.107 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.085 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.106 |
| SRR2868004 | Drought Stress (root) | 10.015 |
| SRR2967015 | Control (root) | 7.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.734 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.802 |
| SRR9715742 | Root | 1.166 |
| SRR9715743 | Root | 0.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.511 |
| SRR8749028 | MeJA induced 9h | 0.893 |
| SRR8749029 | MeJA induced 9h | 2.799 |
| SRR8749030 | Uninduced | 0.035 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.677 |
| SRR8400027 | Control - Root | 5.236 |