Gene detail

Gene detail information of Glyur000287s00022143

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05190.1	3.00E-99	Ribosomal protein L6 family
NR	XP_004514093.1	1.16E-143	PREDICTED: 50S ribosomal protein L6, chloroplastic-like [Cicer arietinum]
COG	YP_007142682.1	5.00E-65	50S ribosomal protein L6 [Crinalium epipsammum PCC 9333]
Swissprot	tr\|O23049\|RK6_ARATH	3.00E-125	50S ribosomal protein L6, chloroplastic (Precursor)
trEMBL	tr\|I1MPT8\|I1MPT8_SOYBN	2.00E-141	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G31250.1}

Sequence

Transcript Sequence

>Glyur000287s00022143.1
GAAATTTCTTGGATCAGAAACCGTTTTGACAAAAATAAAAAAACATCAGAAACCGCAATTACTCACCGTTCGCCGATTACACCACTGTAGTCTGTAGCAGATAACATTAACAGGTAGCAAACTTGGATAAGGTTTGTTTTTGTTTTTTGCCTCTTGCTGGAAANTGAGGCTCTTCGCACACTCACACAAAGCCTTGTAACAATGGCTTCCTCAGTTACCTCCTCTTTTCAAATCAGCAATTTTAAGTCTGTTTTCTTGGGTGAGAGAAGTAAGCTCAGAGTTCCAAGTGTTCCTACTGCTCATGTTGGTTTCCTTAGAAAGACTACAGAATGCAAGGAATCGCGGATAGGGAAGCAACCAGTTGTTATTCCATCCAATGTTACAATCAAATTGGAAGGGCAGGACATACAAGTGAAAGGTCCTTTGGGAGAACTTTCATTAACTTATCCTCGAGAAGTGAAGGTTGAGAGACAAGAGACAGGGACTCTAAGAGTCAGTAAGGCAGTCGAAACCAGAAGGGCGAATCAAATGCATGGGCTCTTCAGGACACTTACGGACAACTTGGTGGTTGGAGTATCTAAAGGTTTCGAAAAGAAACTCGAGCTTATNGGTGTCGGGTATCGTGCCACGGTAGAAGGGAATGAAGTAGTGCTGAATCTTGGATTCTCTCACCCTGTTAGGATGCCAATCCCTGAAGGCCTCAAAGTGAAGGTGGAAGAAAACACCAAGATCACAATCAGTGGGTATGACAAATCTGATATTGGCCAGTTTGCTGCTTCAATTAGGAAATGGAGACCCCCAGAACCATACAAAGGTAAGGGGATCAAATATGCTGATGAAGTTGTGAGGAGAAAGGAAGGAAAAGCAGGGAAGAAGAAGTAATGGGGTGGGGTGTTTCAATTTTTTTTCCCTTTTTATTTATCTCCTGTTGTTTTTTTGCCTCATTTGTTAGTAGTAATGGAAATATTATATATACCAAGTAAAAGAAATTCATATTGATTCATTAAGGTAAAGCTAGAATCACTTGTGCTTATGATATTTAAAGCATGGCAAAAGCTGTCATTATAGTGTGAACATGATAGTAACTGCTGGTGGATAAGCTGTCATGTATGCATAAACCCAATTTTTTGGTTATGTTGATATCAATTTCAACAAGAAGCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00287	91384	94934	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function

GO:0003735 structural constituent of ribosome

GO:0019843 rRNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000287s00022143.1	PF00347.18	Ribosomal_L6	56	128	1.20E-14
Glyur000287s00022143.1	PF00347.18	Ribosomal_L6	137	210	1.20E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.264
SRR1783600	control	4.253
SRR1783602	moderate drought stress	2.641
SRR1811619	moderate drought stress	2.634

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.595
DRR006520	Root Summer glycyrrhizin high producing strain	7.361
DRR006521	Root Winter glycyrrhizin high producing strain	6.896
DRR006522	Root Winter glycyrrhizin high producing strain	6.998
DRR006523	Root Summer glycyrrhizin low producing strain	5.501
DRR006524	Root Summer glycyrrhizin low producing strain	5.600
DRR006525	Leaf Summer glycyrrhizin high producing strain	72.823
DRR006526	Leaf Summer glycyrrhizin high producing strain	73.025

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.038
SRR2868004	Drought Stress (root)	6.890
SRR2967015	Control (root)	6.885

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	75.901
SRR9715740	Leaf	92.093
SRR9715741	Leaf	48.560
SRR9715739	Root	1.150
SRR9715742	Root	3.629
SRR9715743	Root	3.226

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.826
SRR8749028	MeJA induced 9h	11.796
SRR8749029	MeJA induced 9h	24.268
SRR8749030	Uninduced	9.115
SRR8749031	Uninduced	5.771
SRR8749032	Uninduced	14.527

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.927
SRR8400027	Control - Root	14.837