Gene detail information of Glyur000286s00016513.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G26945.1 | 1.00E-25 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_003543767.1 | 3.82E-51 | PREDICTED: transcription factor bHLH135 [Glycine max] |
| Swissprot | tr|Q9LJX1|PRE5_ARATH | 9.00E-42 | Transcription factor PRE5 |
| trEMBL | tr|V7C1I4|V7C1I4_PHAVU | 1.00E-51 | Uncharacterized protein {ECO:0000313|EMBL:ESW23213.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00286 | 209835 | 212176 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000286s00016513.1 | PF00010.21 | HLH | 23 | 59 | 2.10E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.265 |
| SRR1783600 | control | 0.187 |
| SRR1783602 | moderate drought stress | 0.535 |
| SRR1811619 | moderate drought stress | 0.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.403 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.398 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.576 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.571 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.102 |
| SRR2868004 | Drought Stress (root) | 5.769 |
| SRR2967015 | Control (root) | 4.860 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.068 |
| SRR9715740 | Leaf | 0.531 |
| SRR9715741 | Leaf | 0.633 |
| SRR9715739 | Root | 0.131 |
| SRR9715742 | Root | 1.450 |
| SRR9715743 | Root | 0.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 112.542 |
| SRR8749028 | MeJA induced 9h | 85.141 |
| SRR8749029 | MeJA induced 9h | 27.123 |
| SRR8749030 | Uninduced | 4.296 |
| SRR8749031 | Uninduced | 0.951 |
| SRR8749032 | Uninduced | 1.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.844 |
| SRR8400027 | Control - Root | 3.798 |